44 packages found. Page 1 of 1.

Name Version Votes Popularity? Description Maintainer
bamrescue 0.2.0-1 0 0.00 Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them Arkanosis
bamtools-git 20110606-1 1 0.00 API and toolkit for reading, writing, and manipulating BAM (genome alignment) files. benwbooth
blat 35-1 2 0.00 The BLAST-like Alignment Tool: fast sequence search command line tool Synchronicity
bowtie 1.2.3-1 8 0.00 Bowtie is an alignment tool for short nucleotide sequences against long templates Athemis
dialign 2.2.1-3 1 0.00 Multiple sequence alignment program boenki
gblocks-bin 0.91b-1 0 0.00 A program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences robymetallo
giza-pp-git r21.228a39b-1 0 0.00 A statistical machine translation toolkit used to train word alignment models panosk
gotohscan 2.0_alpha-1 0 0.00 Search short sequences in large database sequences by computing all semi-global alignments RaumZeit
kalign 2.0.4-2 0 0.00 A fast and accurate multiple sequence alignment algorithm designed to align large numbers of sequences talavis
m2m-aligner 1.2-2 3 0.00 Many-to-Many alignment model m01
mafft 7.453-1 12 0.00 Multiple alignment program for amino acid or nucleotide sequences boenki
mgiza 3.0-1 0 0.00 Multithreaded version of Giza, a statistical machine translation toolkit used to train word alignment models panosk
msaprobs 0.9.7-1 0 0.00 Multiple sequence alignment generator talavis
neovim-lion-opt-git 56.75306ac-1 0 0.00 A simple alignment operator for (neo)vim. shanewstone
ngmlr 0.2.7-1 0 0.00 Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes tmiller
ngs 2.10.0-2 2 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. apolih
ngs-python 2.10.0-1 0 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. gamanakis
pfam 31.0-1 0 0.00 The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). anadon
python-astroalign 1.0.3-00 0 0.00 Astrometric Alignment of Images Arcturus
python-fastdtw 0.3.2-1 0 0.00 Python implementation of FastDTW, whis is an approximate Dynamic Time Warping (DTW) algorithm that provides optimal or near-optimal alignments with an O(N) time and memory complexity. conrad784
python-tweakwcs 0.5.1-1 0 0.00 A package for correcting alignment errors in WCS objects Universebenzene
python2-bxpython 0.7.3-1 0 0.00 Tools for manipulating biological data, particularly multiple sequence alignments decryptedepsilon
r-genomicalignments 1.22.1-1 0 0.00 Representation and manipulation of short genomic alignments greyltc
r-rsamtools 2.2.1-1 0 0.00 Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import greyltc
salmon 0.13.1-1 0 0.00 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments tmiller
seaview 4.7-2 10 0.00 GUI for multiple sequence alignment and molecular phylogeny boenki
snap-dna-git v0.15.r199.ea6690f-1 0 0.00 Scalable Nucleotide Alignment Program xihh
star-seq-alignment 2.7.2a-1 0 0.00 An RNA-seq alignment suite, by Alexander Dobin nigeil
stringtie 2.0.4-1 0 0.00 A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts robymetallo
tcoffee 13.39.0.d675aed-1 6 0.00 An alignment tool for Protein, DNA and RNA sequences mschu
tigrfam 15.0-1 0 0.00 TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins. anadon
tmtools 20170708-1 1 0.00 TM-align is a computer algorithm for protein structure alignment using dynamic programming and TM-score rotation matrix Athemis
vim-tabular-git 1.0.0.r1.g00e1e7f-1 4 0.00 Vim script for text filtering and alignment dlin
summovie 1.0.2-2 1 0.00 Calculates electron microscopy movie frame sums using alignment results from Unblur joshinsilico
hisat2 2.1.0-1 1 0.00 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep
fasttree 2.1.11-1 3 0.00 Approximately-Maximum-Likelihood Trees for Large Alignments semi
gmap-gsnap 2019.03.15-1 3 0.00 A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and Genomic Short-read Nucleotide Alignment Program benwbooth
jalview 2.10.5-1 11 0.00 Bioinformatics Multiple Alignment Editor semi
python2-pysam 0.11.2-1 6 0.00 Python interface for the SAM/BAM sequence alignment and mapping format iosonofabio
locarna 1.9.2.2-1 2 0.00 Global and Local Alignment of RNAs RaumZeit
python-pysam 0.15.0-2 10 0.00 Python interface for the SAM/BAM sequence alignment and mapping format iosonofabio
clustalw 2.1-3 4 0.00 Clustal W multiple sequence alignment program, version 2.0 RaumZeit
clustalx 2.1-5 3 0.00 Multiple alignment of nucleic acid and protein sequences RaumZeit
clustal-omega 1.2.4-1 12 0.00 Protein sequence alignment program talavis

44 packages found. Page 1 of 1.