127 packages found. Page 1 of 3.

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Name Version Votes Popularity? Description Maintainer
artemis 16.0.18-1 0 0.00 A genome viewer and annotation tool that visualizes biological sequence features clintval
bbmap 37.90-1 0 0.00 A short read aligner2 and other bioinformatic tools clintval
bcl2fastq-bin 2.20.0.422-2 0 0.00 Demultiplexes data and converts BCL files generated by Illumina sequencers to FASTQ for downstream analysis clintval
bedtools-git v2.27.1.r0.g1de417b9-1 0 0.00 powerful toolset for genome arithmetic. clintval
biobambam 2.0.83-1 0 0.00 BAM file pre-processing utilities for bioinformatics. clintval
biopieces r2311-1 2 0.00 Bioinformatic framework of tools easily used and easily created clintval
centrifuge 1.0.3-1 0 0.00 Bioinformatics taxonomic classifier for microbial classification clintval
centrifuge-bin 1.0.3-2 0 0.00 Bioinformatics taxonomic classifier for microbial classification clintval
csvtk 0.10.0-1 0 0.00 A cross-platform, efficient and practical CSV/TSV toolkit in Golang clintval
csvtk-bin 0.11.0-1 0 0.00 A cross-platform, efficient and practical CSV/TSV toolkit in Golang clintval
fastq_screen 0.11.1-1 0 0.00 A screening application for high througput sequence data clintval
fgbio-git 0.4.0.r21.gc45e26f-1 0 0.00 Tools for working with genomic and high throughput sequencing data. clintval
freebayes 1.1.0-1 0 0.00 A tool for finding polymorphisms in high throughput sequence data. clintval
gatk 2:4.0.0.0-1 0 0.00 Variant discovery in high-throughput bioinformatics sequencing data clintval
genometools 1.5.10-1 0 0.00 A unified set of bioinformatics tools for analyzing genomes clintval
igvtools 2.3.98-2 0 0.00 IGV utilities for preprocessing bioinformatics data files clintval
jellyfish-pythonbound 2.2.4-2 0 0.00 A tool for fast, memory-efficient counting of k-mers in DNA clintval
kraken 1.1-2 0 0.00 Kraken taxonomic sequence classification system clintval
libmaus 2.0.442-1 0 0.00 Bioinformatics data structures and algorithms in C++ clintval
lollipops 1.3.2-1 0 0.00 Lollipop-style mutation diagrams for annotating genetic variations clintval
lollipops-bin 1.3.2-1 0 0.00 Lollipop-style mutation diagrams for annotating genetic variations clintval
mosdepth 0.2.1-2 0 0.00 Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing clintval
mosdepth-bin 0.2.1-2 0 0.00 Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing clintval
pmonitor-git r15.97604f3-3 0 0.00 Monitor a job's progress clintval
python-codecov 2.0.15-1 0 0.00 Hosted coverage reports for Github, Bitbucket and Gitlab clintval
python-crimson 0.3.0-1 0 0.00 Bioinformatics tool outputs converter to JSON or YAML clintval
python-curses-menu 0.5.0-2 0 0.00 A simple console menu system using curses in Python clintval
python-cyvcf2 0.8.6-1 0 0.00 Fast VCF/BCF processor in Python using Cython and htslib clintval
python-datacache 0.4.20-2 0 0.00 Python helpers for transparently downloading datasets clintval
python-declxml 0.11.0-2 0 0.00 Declarative XML processing for Python. clintval
python-declxml-git 0.10.0.r0.gb59c66c-1 0 0.00 Declarative XML processing for Python. clintval
python-ete 3.1.1-2 0 0.00 Python toolkit for building, comparing, annotating, manipulating and visualising phylogenetic trees clintval
python-fastcluster 1.1.24-1 0 0.00 Fast hierarchical clustering routines for R and Python. clintval
python-geneimpacts 0.3.4-1 0 0.00 Compare and normalize effects from variant annotation tools (snpEff, VEP) clintval
python-gff3 0.3.0-2 0 0.00 Manipulate genomic features and validate the syntax and reference sequence of GFF3 files clintval
python-gffutils 0.9-3 0 0.00 GFF and GTF file manipulation and interconversion in Python clintval
python-gtfparse 0.0.6-2 0 0.00 Python library for parsing GTF files clintval
python-hgvs 1.1.1-1 0 0.00 HGVS Python parser, formatter, mapper, validator clintval
python-logzero 1.3.1-2 0 0.00 Robust and effective logging for Python 2 and 3 clintval
python-lzstring 1.0.3-2 0 0.00 LZ-string compression for Python clintval
python-memoized-property 1.0.3-3 0 0.00 Python decorator for defining properties that only run their fget function once clintval
python-multiqc 1.4-2 0 0.00 Create aggregate bioinformatics analysis reports across many samples and tools clintval
python-nose-progressive 1.5.1-2 0 0.00 A Python nose plugin with a progress bar and smarter tracebacks clintval
python-ordered-set 2.0.2-2 0 0.00 Python MutableSet that remembers its order, so that every entry has an index clintval
python-polo 0.5-1 0 0.00 Python optimal leaf ordering for hierarchical clustering clintval
python-progressbar33 2.4-2 0 0.00 Text progress bar library for Python clintval
python-pybedtools 0.7.10-4 0 0.00 Python wrapper for the bioinformatics genomic arithmetic tool bedtools clintval
python-pybedtools-git 0.7.10.r25.g9ab3ff6-2 0 0.00 Python wrapper for the bioinformatics genomic arithmetic tool bedtools clintval
python-pybigwig 0.3.10-1 0 0.00 A Python extension for quick access to bigWig and bigBed files clintval
python-pybwa 0.2.4-1 0 0.00 Python libraries to interact with the BWA mapper. clintval

127 packages found. Page 1 of 3.

1 2 3 Next › Last »