171 packages found. Page 1 of 4.

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Name Version Votes Popularity? Description Maintainer
artemis 17.0.1-1 0 0.00 A genome viewer and annotation tool that visualizes biological sequence features clintval
bbmap 37.99-3 0 0.00 A short read aligner and other bioinformatic tools clintval
bcl2fastq-bin 2.20.0.422-2 0 0.00 Demultiplexes data and converts BCL files generated by Illumina sequencers to FASTQ for downstream analysis clintval
bedtools-git v2.27.1.r0.g1de417b9-1 0 0.00 powerful toolset for genome arithmetic. clintval
biobambam 2.0.87-1 0 0.00 BAM file pre-processing utilities for bioinformatics. clintval
biopieces 2.0-1 2 0.00 Bioinformatic framework of tools easily used and easily created clintval
catt 0.7.0-1 1 0.13 Send videos from many, many online sources to your Chromecast clintval
centrifuge 1.0.4-1 0 0.00 Bioinformatics taxonomic classifier for microbial classification clintval
centrifuge-bin 1.0.4-1 0 0.00 Bioinformatics taxonomic classifier for microbial classification clintval
csvtk 0.10.0-1 1 0.39 A cross-platform, efficient and practical CSV/TSV toolkit in Golang clintval
csvtk-bin 0.11.0-1 0 0.00 A cross-platform, efficient and practical CSV/TSV toolkit in Golang clintval
dwgsim 0.1.12-1 0 0.00 Whole genome read simulator for Next-Generation Sequencing data clintval
dwgsim-git r159.39a1bbb-3 0 0.00 Whole genome read simulator for Next-Generation Sequencing data clintval
fastq_screen 0.11.1-1 0 0.00 A screening application for high througput sequence data clintval
fgbio-git 0.4.0.r21.gc45e26f-1 0 0.00 Tools for working with genomic and high throughput sequencing data. clintval
freebayes 1.2.0-1 1 0.09 A tool for finding polymorphisms in high throughput sequence data. clintval
gatk 2:4.0.7.0-1 0 0.00 Variant discovery in high-throughput bioinformatics sequencing data clintval
genometools 1.5.10-1 0 0.00 A unified set of bioinformatics tools for analyzing genomes clintval
graphpath 1.0-2 0 0.00 Graphpath generates an ASCII network diagram from the route table of a Unix/Linux router clintval
hosts 3.1.0-1 1 0.93 A command line tool for managing hosts file entries. clintval
igvtools 2.3.98-2 0 0.00 IGV utilities for preprocessing bioinformatics data files clintval
jellyfish-pythonbound 2.2.4-2 0 0.00 A tool for fast, memory-efficient counting of k-mers in DNA clintval
kraken 1.1-4 0 0.00 Kraken taxonomic sequence classification system clintval
libmaus 2.0.504-2 1 0.32 Bioinformatics data structures and algorithms in C++ clintval
lollipops 1.3.2-1 0 0.00 Lollipop-style mutation diagrams for annotating genetic variations clintval
lollipops-bin 1.3.2-1 0 0.00 Lollipop-style mutation diagrams for annotating genetic variations clintval
mosdepth 0.2.1-2 0 0.00 Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing clintval
mosdepth-bin 0.2.1-2 0 0.00 Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing clintval
pmonitor-git r15.97604f3-3 0 0.00 Monitor a job's progress clintval
python-adjusttext 0.7-1 0 0.00 A small library for automatically adjusting text position in matplotlib plots to minimize overlaps clintval
python-bcbio-gff 0.6.4-1 0 0.00 Library to read and write Generic Feature Format clintval
python-cachy 0.1.1-1 0 0.00 Cachy provides a simple yet effective caching library. clintval
python-cleo 0.6.6-1 0 0.00 Cleo allows you to create beautiful and testable command-line interfaces clintval
python-codecov 2.0.15-1 0 0.00 Hosted coverage reports for Github, Bitbucket and Gitlab clintval
python-crimson 0.3.0-1 0 0.00 Bioinformatics tool outputs converter to JSON or YAML clintval
python-curses-menu 0.5.0-2 0 0.00 A simple console menu system using curses in Python clintval
python-custom_inherit 2.2.0-1 0 0.00 A Python package that provides tools for inheriting docstrings in customizable ways clintval
python-cyvcf2 0.8.6-1 0 0.00 Fast VCF/BCF processor in Python using Cython and htslib clintval
python-datacache 0.4.20-2 0 0.00 Python helpers for transparently downloading datasets clintval
python-datrie 0.7.1-1 0 0.00 Super-fast, efficiently stored Trie for Python clintval
python-declxml 0.11.0-2 0 0.00 Declarative XML processing for Python. clintval
python-declxml-git 0.10.0.r0.gb59c66c-1 0 0.00 Declarative XML processing for Python. clintval
python-distance 0.1.3-1 0 0.00 Many C implemented Levenshtein and Hamming distance computations in Python clintval
python-ete 3.1.1-2 0 0.00 Python toolkit for building, comparing, annotating, manipulating and visualising phylogenetic trees clintval
python-fastcluster 1.1.25-1 0 0.00 Fast hierarchical clustering routines for R and Python clintval
python-geneimpacts 0.3.4-1 0 0.00 Compare and normalize effects from variant annotation tools (snpEff, VEP) clintval
python-gff3 0.3.0-2 0 0.00 Manipulate genomic features and validate the syntax and reference sequence of GFF3 files clintval
python-gffutils 0.9-3 0 0.00 GFF and GTF file manipulation and interconversion in Python clintval
python-gtfparse 0.0.6-2 0 0.00 Python library for parsing GTF files clintval
python-hgvs 1.1.1-1 0 0.00 HGVS Python parser, formatter, mapper, validator clintval

171 packages found. Page 1 of 4.

1 2 3 4 Next › Last »