|
r-methped
|
1.30.0-2 |
0 |
0.00
|
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes |
BioArchLinuxBot
|
2024-04-18 18:29 (UTC) |
|
r-medips
|
1.54.0-1 |
0 |
0.00
|
DNA IP-seq data analysis |
BioArchLinuxBot
|
2023-10-27 11:19 (UTC) |
|
r-mbpcr
|
1.56.0-1 |
0 |
0.00
|
Bayesian Piecewise Constant Regression for DNA copy number estimation |
BioArchLinuxBot
|
2023-10-27 08:48 (UTC) |
|
r-mbamethyl
|
1.36.0-2 |
0 |
0.00
|
Model-based analysis of DNA methylation data |
BioArchLinuxBot
|
2024-03-29 18:03 (UTC) |
|
r-maigespack
|
1.64.0-2 |
0 |
0.00
|
Functions to handle cDNA microarray data, including several methods of data analysis |
BioArchLinuxBot
|
2024-02-11 18:05 (UTC) |
|
r-magar
|
1.10.0-1 |
0 |
0.00
|
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data |
BioArchLinuxBot
|
2023-10-28 15:04 (UTC) |
|
r-ledpred
|
1.36.0-1 |
0 |
0.00
|
Learning from DNA to Predict Enhancers |
BioArchLinuxBot
|
2023-10-25 20:53 (UTC) |
|
r-inetgrate
|
1.0.0-1 |
0 |
0.00
|
Integrates DNA methylation data with gene expression in a single gene network |
pekkarr
|
2023-11-25 11:22 (UTC) |
|
r-glad
|
2.66.0-1 |
0 |
0.00
|
Gain and Loss Analysis of DNA |
BioArchLinuxBot
|
2023-10-25 19:52 (UTC) |
|
r-genomautomorphism
|
1.4.0-1 |
0 |
0.00
|
Compute the automorphisms between DNA's Abelian group representations |
pekkarr
|
2023-11-30 20:20 (UTC) |
|
r-gdnax
|
1.0.2-1 |
0 |
0.00
|
Diagnostics for assessing genomic DNA contamination in RNA-seq data |
pekkarr
|
2024-03-20 18:17 (UTC) |
|
r-gdnainrnaseqdata
|
1.2.0-1 |
0 |
0.00
|
RNA-seq data with different levels of gDNA contamination |
pekkarr
|
2023-11-23 19:49 (UTC) |
|
r-fscanr
|
1.12.0-1 |
0 |
0.00
|
Detect Programmed Ribosomal Frameshifting Events from mRNA/cDNA BLASTX Output |
BioArchLinuxBot
|
2024-04-13 18:01 (UTC) |
|
r-frenchfish
|
1.14.0-1 |
0 |
0.00
|
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections |
BioArchLinuxBot
|
2023-10-25 21:05 (UTC) |
|
r-fdb.infiniummethylation.hg19
|
2.2.0-3 |
0 |
0.00
|
Annotation package for Illumina Infinium DNA methylation probes |
BioArchLinuxBot
|
2022-06-06 01:34 (UTC) |
|
r-epimutacions
|
1.6.1-1 |
0 |
0.00
|
Robust outlier identification for DNA methylation data |
pekkarr
|
2023-12-09 10:40 (UTC) |
|
r-epimix
|
1.4.0-3 |
0 |
0.00
|
an integrative tool for the population-level analysis of DNA methylation |
pekkarr
|
2023-12-15 12:46 (UTC) |
|
r-enmix
|
1.38.01-1 |
0 |
0.00
|
Quality control and analysis tools for Illumina DNA methylation BeadChip |
BioArchLinuxBot
|
2023-10-27 14:44 (UTC) |
|
r-dnashaper
|
1.30.0-1 |
0 |
0.00
|
High-throughput prediction of DNA shape features |
BioArchLinuxBot
|
2023-10-26 02:39 (UTC) |
|
r-dnafusion
|
1.4.0-1 |
0 |
0.00
|
Identification of gene fusions using paired-end sequencing |
pekkarr
|
2023-11-30 13:35 (UTC) |
|
r-dnacopy
|
1.76.0-3 |
0 |
0.00
|
DNA Copy Number Data Analysis |
BioArchLinuxBot
|
2024-04-24 18:52 (UTC) |
|
r-dnabarcodes
|
1.32.0-2 |
0 |
0.00
|
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments |
BioArchLinuxBot
|
2024-04-25 02:27 (UTC) |
|
r-dnabarcodecompatibility
|
1.18.0-1 |
0 |
0.00
|
A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms |
BioArchLinuxBot
|
2023-10-25 22:06 (UTC) |
|
r-diffloop
|
1.24.0-4 |
0 |
0.00
|
Identifying differential DNA loops from chromatin topology data |
BioArchLinuxBot
|
2022-11-04 06:35 (UTC) |
|
r-conumee
|
1.36.0-1 |
0 |
0.00
|
Enhanced copy-number variation analysis using Illumina DNA methylation arrays |
BioArchLinuxBot
|
2023-10-27 13:37 (UTC) |
|
r-comet
|
1.34.0-1 |
0 |
0.00
|
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns |
BioArchLinuxBot
|
2023-10-27 14:53 (UTC) |
|
r-cfdnapro
|
1.8.0-1 |
0 |
0.00
|
cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy |
BioArchLinuxBot
|
2023-10-27 11:42 (UTC) |
|
r-cfdnakit
|
1.0.1-1 |
0 |
0.00
|
Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA) |
pekkarr
|
2024-04-06 06:01 (UTC) |
|
r-cexor
|
1.40.0-1 |
0 |
0.00
|
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates |
BioArchLinuxBot
|
2023-10-27 13:08 (UTC) |
|
r-cellbarcode
|
1.8.1-1 |
0 |
0.00
|
Cellular DNA Barcode Analysis toolkit |
BioArchLinuxBot
|
2024-02-22 06:02 (UTC) |
|
r-beclear
|
2.18.0-1 |
0 |
0.00
|
Correction of batch effects in DNA methylation data |
BioArchLinuxBot
|
2023-10-25 22:11 (UTC) |
|
r-bcrank
|
1.64.0-1 |
0 |
0.00
|
Predicting binding site consensus from ranked DNA sequences |
BioArchLinuxBot
|
2023-10-26 03:10 (UTC) |
|
r-alphabeta
|
1.16.0-1 |
0 |
0.00
|
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants |
BioArchLinuxBot
|
2023-10-25 23:56 (UTC) |
|
python-pydna
|
5.2.0-1 |
0 |
0.00
|
Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules |
carlosal1015
|
2023-05-21 19:55 (UTC) |
|
python-idna_ssl
|
1.1.0-6 |
0 |
0.00
|
Patch ssl.match_hostname for Unicode(idna_ssl) domains support |
orphan
|
2023-04-13 09:10 (UTC) |
|
python-eltetrado
|
1.5.16-1 |
0 |
0.00
|
Find and classify tetrads and quadruplexes in DNA/RNA 3D structures |
tzok
|
2023-11-15 10:43 (UTC) |
|
python-drawtetrado
|
1.5.0-2 |
0 |
0.00
|
Visualize quadruplexes and G4-helices in DNA and RNA structures |
tzok
|
2024-01-04 12:39 (UTC) |
|
python-dnaio
|
1.2.0-1 |
0 |
0.00
|
Python library for very efficient parsing and writing of FASTQ and FASTA files |
kbipinkumar
|
2023-12-11 18:26 (UTC) |
|
primer3
|
2.6.1-1 |
3 |
0.00
|
Tool to design flanking oligo nucleotides for DNA amplification |
mschu
|
2022-02-21 04:15 (UTC) |
|
plasma-midna-theme-git
|
r152.8359aaa-1 |
2 |
0.00
|
KaOS grey KDM-Theme. |
warlock9000
|
2016-03-31 11:23 (UTC) |
|
phyml-mpi
|
1:3.3.20220408-1 |
1 |
0.00
|
Builds phylogenies from DNA or protein sequences using a maximum likelihood approach, using multiple processors |
Rhinoceros
|
2023-12-08 02:48 (UTC) |
|
phyml
|
1:3.3.20220408-1 |
6 |
0.00
|
Builds phylogenies from DNA or protein sequences using a maximum likelihood approach |
mschu
|
2022-04-11 08:17 (UTC) |
|
phyde
|
0.9971-2 |
0 |
0.00
|
a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data |
malacology
|
2022-08-28 10:34 (UTC) |
|
pftools
|
2.3-3 |
0 |
0.00
|
Contains all the software necessary to build protein and DNA generalized profiles and use them to scan and align sequences, and search databases. |
anadon
|
2018-04-09 19:44 (UTC) |
|
nthash-bcgsc
|
2.3.0-3 |
0 |
0.00
|
Fast hash function for DNA/RNA sequences. https://doi.org/10.1093/bioinformatics/btac564 |
kbipinkumar
|
2023-11-09 00:01 (UTC) |
|
naf-git
|
1.0.0.r92.g814c820-1 |
1 |
0.00
|
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences |
Piezo
|
2019-11-03 12:50 (UTC) |
|
mrmodeltest
|
2.4-1 |
0 |
0.00
|
C program for selecting DNA substitution models using PAUP* |
malacology
|
2021-12-22 20:53 (UTC) |
|
motifsampler
|
3.2-1 |
0 |
0.00
|
The Gibbs Motif Sampler for identifying motifs, conserved regions, in DNA or protein sequences |
orphan
|
2024-02-18 08:06 (UTC) |
|
modeltest-ng-mpi
|
0.1.7-7 |
0 |
0.00
|
A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models. https://doi.org/10.1093/molbev/msz189 |
malacology
|
2022-08-28 22:03 (UTC) |
|
modeltest-ng
|
0.1.7-6 |
0 |
0.00
|
A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models. https://doi.org/10.1093/molbev/msz189 |
malacology
|
2023-03-25 22:23 (UTC) |