146 packages found. Page 1 of 3.

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Name Version Votes Popularity? Description Maintainer Last Updated
oxdna-cuda-git v3.6.1.r10.g9af1214a-1 2 0.21 DNA/RNA/etc simulator, from lorenzo-rovigatti/oxDNA, with CUDA support and analysis tools. cge 2024-03-23 10:33 (UTC)
oxdna-cuda 3.6.0-1 1 0.19 DNA/RNA/etc simulator, with CUDA support and analysis tools. cge 2024-01-27 18:00 (UTC)
r-minfi 1.48.0-1 1 0.18 Analyze Illumina Infinium DNA methylation arrays BioArchLinuxBot 2023-10-27 11:56 (UTC)
mednaffe 0.9.2-1 35 0.02 front-end (GUI) for mednafen emulator Vaporeon 2022-01-03 14:32 (UTC)
libretro-beetle-vb-git 817.efa6475-1 6 0.01 Virtual Boy emu - Standalone port of Beetle / Mednafen VB to libretro. InstallerLegacy 2021-06-24 07:03 (UTC)
libretro-beetle-pcfx-git r767.84b7ca6-1 1 0.01 Mednafen PCFX libretro core (NEC PC-FX). Enverex 2018-08-14 13:19 (UTC)
midna-theme 7.0.2-1 7 0.00 KaOS Plasma 6 Look & Feel theme files noraj 2024-03-08 10:20 (UTC)
python2-idna 2.10-4 2 0.00 Internationalized Domain Names in Applications (IDNA) tallero 2024-01-29 17:42 (UTC)
plymouth-theme-dna-git r28.32a0d92-1 3 0.00 The plymouth theme collection by adi1090x freundTech 2020-09-02 13:29 (UTC)
diamond 2.1.9-1 3 0.00 High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x BioArchLinuxBot 2024-01-31 18:09 (UTC)
x3dna-dssr 1.9.10_20200423-1 0 0.00 DSSR, an integrated software tool for Dissecting the Spatial Structure of RNA. Please see: http://forum.x3dna.org/site-announcements/download-instructions/ orphan 2020-05-13 07:21 (UTC)
x3dna 2.4.4_20190909-1 0 0.00 3DNA is a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid-containing structures. Please see: http://forum.x3dna.org/site-announcements/download-instructions/ orphan 2019-09-16 08:03 (UTC)
unandmanager 2.1.3-1 1 0.00 A tool to backup a rednand install opendata26 2017-03-26 13:48 (UTC)
tcoffee 13.46.0.919e8c6b-1 6 0.00 An alignment tool for Protein, DNA and RNA sequences mschu 2023-08-15 19:00 (UTC)
speciesidentifier 1.9-6 1 0.00 Taxonomy-aware DNA sequence processing toolkit malacology 2022-12-04 01:53 (UTC)
sequencematrix 1.9-6 1 0.00 Taxonomy-aware DNA sequence processing toolkit malacology 2022-12-04 01:53 (UTC)
genbankexplorer 1.9-6 1 0.00 Taxonomy-aware DNA sequence processing toolkit malacology 2022-12-04 01:53 (UTC)
subread 2.0.6-1 0 0.00 a general-purpose read aligner which can align both genomic DNA-seq and RNA-seq reads, https://doi.org/10.1093/nar/gkt214 kbipinkumar 2023-05-10 06:01 (UTC)
staden-io_lib 1.15.0-1 6 0.00 DNA sequence assembly (Gap4) and editing and analysis tools (Spin) mschu 2023-06-13 20:37 (UTC)
staden 2.0.0b11-2 8 0.00 Tools for DNA sequence assembly (Gap4/5), editing and analysis (Spin) mschu 2021-07-20 08:56 (UTC)
spaln 3.0.2-2 0 0.00 Splicing-aware transcript (cDNA/EST or protein sequences) alignment to genomic DNA kbipinkumar 2023-11-17 07:09 (UTC)
snap-dna-git v0.15.r199.ea6690f-1 0 0.00 Scalable Nucleotide Alignment Program xihh 2016-10-09 03:11 (UTC)
regtools-git 1.0.0.r0.3068563-1 0 0.00 Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context levitsky 2023-01-30 20:37 (UTC)
r-triplex 1.42.0-1 0 0.00 Search and visualize intramolecular triplex-forming sequences in DNA BioArchLinuxBot 2023-10-26 03:06 (UTC)
r-stepnorm 1.74.0-1 0 0.00 Stepwise normalization functions for cDNA microarrays BioArchLinuxBot 2023-10-26 07:03 (UTC)
r-soniclength 1.4.7-9 0 0.00 Estimating Abundance of Clones from DNA Fragmentation Data BioArchLinuxBot 2024-03-07 00:04 (UTC)
r-sesame 1.20.0-1 0 0.00 SEnsible Step-wise Analysis of DNA MEthylation BeadChips BioArchLinuxBot 2023-10-27 07:23 (UTC)
r-seqlogo 1.68.0-2 0 0.00 Sequence logos for DNA sequence alignments BioArchLinuxBot 2024-03-07 12:11 (UTC)
r-scope 1.14.0-1 0 0.00 A normalization and copy number estimation method for single-cell DNA sequencing BioArchLinuxBot 2023-10-27 11:31 (UTC)
r-scmet 1.4.0-3 0 0.00 Bayesian modelling of cell-to-cell DNA methylation heterogeneity pekkarr 2024-02-08 13:59 (UTC)
r-rprimer 1.6.0-1 0 0.00 Design Degenerate Oligos from a Multiple DNA Sequence Alignment pekkarr 2023-12-12 20:26 (UTC)
r-reffreeewas 2.2-11 0 0.00 EWAS using Reference-Free DNA Methylation Mixture Deconvolution BioArchLinuxBot 2022-11-27 06:01 (UTC)
r-recountmethylation 1.12.0-1 0 0.00 Access and analyze DNA methylation database compilations BioArchLinuxBot 2023-10-27 13:31 (UTC)
r-qdnaseq 1.38.0-1 0 0.00 Quantitative DNA Sequencing for Chromosomal Aberrations BioArchLinuxBot 2023-10-26 07:52 (UTC)
r-pscbs 0.67.0-1 0 0.00 Analysis of Parent-Specific DNA Copy Numbers BioArchLinuxBot 2024-02-18 00:02 (UTC)
r-podcall 1.10.1-1 0 0.00 Positive Droplet Calling for DNA Methylation Droplet Digital PCR BioArchLinuxBot 2024-01-18 00:05 (UTC)
r-plasmut 1.0.0-1 0 0.00 Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic pekkarr 2023-11-28 11:42 (UTC)
r-planet 1.10.0-1 0 0.00 Placental DNA methylation analysis tools BioArchLinuxBot 2023-10-25 20:42 (UTC)
r-periodicdna 1.12.0-1 0 0.00 Set of tools to identify periodic occurrences of k-mers in DNA sequences BioArchLinuxBot 2023-10-27 11:22 (UTC)
r-nnnorm 2.66.0-1 0 0.00 Spatial and intensity based normalization of cDNA microarray data based on robust neural nets BioArchLinuxBot 2023-10-26 07:01 (UTC)
r-msa2dist 1.6.0-1 0 0.00 MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis pekkarr 2023-10-26 02:35 (UTC)
r-motifstack 1.46.0-1 0 0.00 Plot stacked logos for single or multiple DNA, RNA and amino acid sequence BioArchLinuxBot 2023-10-27 13:18 (UTC)
r-motifdb 1.44.0-1 0 0.00 An Annotated Collection of Protein-DNA Binding Sequence Motifs BioArchLinuxBot 2023-10-27 09:12 (UTC)
r-motifcounter 1.26.0-1 0 0.00 R package for analysing TFBSs in DNA sequences BioArchLinuxBot 2023-10-26 03:00 (UTC)
r-methylpipe 1.36.0-1 0 0.00 Base resolution DNA methylation data analysis BioArchLinuxBot 2023-10-27 15:02 (UTC)
r-methylkit 1.28.0-1 0 0.00 DNA methylation analysis from high-throughput bisulfite sequencing results BioArchLinuxBot 2023-10-27 09:18 (UTC)
r-methylclock 1.8.0-1 0 0.00 Methylclock - DNA methylation-based clocks BioArchLinuxBot 2023-10-28 13:41 (UTC)
r-methylcc 1.16.0-1 0 0.00 Estimate the cell composition of whole blood in DNA methylation samples BioArchLinuxBot 2023-10-27 14:36 (UTC)
r-methylaid 1.36.0-1 0 0.00 Visual and interactive quality control of large Illumina DNA Methylation array data sets BioArchLinuxBot 2023-10-27 13:26 (UTC)
r-methreg 1.12.0-1 0 0.00 Assessing the regulatory potential of DNA methylation regions or sites on gene transcription BioArchLinuxBot 2023-10-27 09:00 (UTC)

146 packages found. Page 1 of 3.

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