145 packages found. Page 2 of 3.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-seqlogo 1.68.0-2 0 0.00 Sequence logos for DNA sequence alignments BioArchLinuxBot 2024-03-07 12:11 (UTC)
r-scope 1.14.0-1 0 0.00 A normalization and copy number estimation method for single-cell DNA sequencing BioArchLinuxBot 2023-10-27 11:31 (UTC)
r-scmet 1.4.0-3 0 0.00 Bayesian modelling of cell-to-cell DNA methylation heterogeneity pekkarr 2024-02-08 13:59 (UTC)
r-rprimer 1.6.0-1 0 0.00 Design Degenerate Oligos from a Multiple DNA Sequence Alignment pekkarr 2023-12-12 20:26 (UTC)
r-reffreeewas 2.2-11 0 0.00 EWAS using Reference-Free DNA Methylation Mixture Deconvolution BioArchLinuxBot 2022-11-27 06:01 (UTC)
r-recountmethylation 1.12.0-1 0 0.00 Access and analyze DNA methylation database compilations BioArchLinuxBot 2023-10-27 13:31 (UTC)
r-qdnaseq 1.38.0-1 0 0.00 Quantitative DNA Sequencing for Chromosomal Aberrations BioArchLinuxBot 2023-10-26 07:52 (UTC)
r-pscbs 0.67.0-1 0 0.00 Analysis of Parent-Specific DNA Copy Numbers BioArchLinuxBot 2024-02-18 00:02 (UTC)
r-podcall 1.10.1-1 0 0.00 Positive Droplet Calling for DNA Methylation Droplet Digital PCR BioArchLinuxBot 2024-01-18 00:05 (UTC)
r-plasmut 1.0.0-1 0 0.00 Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic pekkarr 2023-11-28 11:42 (UTC)
r-planet 1.10.0-1 0 0.00 Placental DNA methylation analysis tools BioArchLinuxBot 2023-10-25 20:42 (UTC)
r-periodicdna 1.12.0-1 0 0.00 Set of tools to identify periodic occurrences of k-mers in DNA sequences BioArchLinuxBot 2023-10-27 11:22 (UTC)
r-nnnorm 2.66.0-1 0 0.00 Spatial and intensity based normalization of cDNA microarray data based on robust neural nets BioArchLinuxBot 2023-10-26 07:01 (UTC)
r-msa2dist 1.6.0-1 0 0.00 MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis pekkarr 2023-10-26 02:35 (UTC)
r-motifstack 1.46.0-1 0 0.00 Plot stacked logos for single or multiple DNA, RNA and amino acid sequence BioArchLinuxBot 2023-10-27 13:18 (UTC)
r-motifdb 1.44.0-1 0 0.00 An Annotated Collection of Protein-DNA Binding Sequence Motifs BioArchLinuxBot 2023-10-27 09:12 (UTC)
r-motifcounter 1.26.0-1 0 0.00 R package for analysing TFBSs in DNA sequences BioArchLinuxBot 2023-10-26 03:00 (UTC)
r-methylpipe 1.36.0-1 0 0.00 Base resolution DNA methylation data analysis BioArchLinuxBot 2023-10-27 15:02 (UTC)
r-methylkit 1.28.0-1 0 0.00 DNA methylation analysis from high-throughput bisulfite sequencing results BioArchLinuxBot 2023-10-27 09:18 (UTC)
r-methylclock 1.8.0-1 0 0.00 Methylclock - DNA methylation-based clocks BioArchLinuxBot 2023-10-28 13:41 (UTC)
r-methylcc 1.16.0-1 0 0.00 Estimate the cell composition of whole blood in DNA methylation samples BioArchLinuxBot 2023-10-27 14:36 (UTC)
r-methylaid 1.36.0-1 0 0.00 Visual and interactive quality control of large Illumina DNA Methylation array data sets BioArchLinuxBot 2023-10-27 13:26 (UTC)
r-methreg 1.12.0-1 0 0.00 Assessing the regulatory potential of DNA methylation regions or sites on gene transcription BioArchLinuxBot 2023-10-27 09:00 (UTC)
r-methped 1.30.0-1 0 0.00 A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes BioArchLinuxBot 2023-10-25 22:57 (UTC)
r-medips 1.54.0-1 0 0.00 DNA IP-seq data analysis BioArchLinuxBot 2023-10-27 11:19 (UTC)
r-mbpcr 1.56.0-1 0 0.00 Bayesian Piecewise Constant Regression for DNA copy number estimation BioArchLinuxBot 2023-10-27 08:48 (UTC)
r-mbamethyl 1.36.0-1 0 0.00 Model-based analysis of DNA methylation data BioArchLinuxBot 2023-10-25 18:26 (UTC)
r-maigespack 1.64.0-2 0 0.00 Functions to handle cDNA microarray data, including several methods of data analysis BioArchLinuxBot 2024-02-11 18:05 (UTC)
r-magar 1.10.0-1 0 0.00 MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data BioArchLinuxBot 2023-10-28 15:04 (UTC)
r-ledpred 1.36.0-1 0 0.00 Learning from DNA to Predict Enhancers BioArchLinuxBot 2023-10-25 20:53 (UTC)
r-inetgrate 1.0.0-1 0 0.00 Integrates DNA methylation data with gene expression in a single gene network pekkarr 2023-11-25 11:22 (UTC)
r-glad 2.66.0-1 0 0.00 Gain and Loss Analysis of DNA BioArchLinuxBot 2023-10-25 19:52 (UTC)
r-genomautomorphism 1.4.0-1 0 0.00 Compute the automorphisms between DNA's Abelian group representations pekkarr 2023-11-30 20:20 (UTC)
r-gdnax 1.0.2-1 0 0.00 Diagnostics for assessing genomic DNA contamination in RNA-seq data pekkarr 2024-03-20 18:17 (UTC)
r-gdnainrnaseqdata 1.2.0-1 0 0.00 RNA-seq data with different levels of gDNA contamination pekkarr 2023-11-23 19:49 (UTC)
r-fscanr 1.10.0-2 0 0.00 Detect Programmed Ribosomal Frameshifting Events from mRNA/cDNA BLASTX Output BioArchLinuxBot 2024-02-11 12:01 (UTC)
r-frenchfish 1.14.0-1 0 0.00 Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections BioArchLinuxBot 2023-10-25 21:05 (UTC)
r-fdb.infiniummethylation.hg19 2.2.0-3 0 0.00 Annotation package for Illumina Infinium DNA methylation probes BioArchLinuxBot 2022-06-06 01:34 (UTC)
r-epimutacions 1.6.1-1 0 0.00 Robust outlier identification for DNA methylation data pekkarr 2023-12-09 10:40 (UTC)
r-epimix 1.4.0-3 0 0.00 an integrative tool for the population-level analysis of DNA methylation pekkarr 2023-12-15 12:46 (UTC)
r-enmix 1.38.01-1 0 0.00 Quality control and analysis tools for Illumina DNA methylation BeadChip BioArchLinuxBot 2023-10-27 14:44 (UTC)
r-dnashaper 1.30.0-1 0 0.00 High-throughput prediction of DNA shape features BioArchLinuxBot 2023-10-26 02:39 (UTC)
r-dnafusion 1.4.0-1 0 0.00 Identification of gene fusions using paired-end sequencing pekkarr 2023-11-30 13:35 (UTC)
r-dnacopy 1.76.0-2 0 0.00 DNA Copy Number Data Analysis BioArchLinuxBot 2023-12-16 12:01 (UTC)
r-dnabarcodes 1.32.0-1 0 0.00 A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments BioArchLinuxBot 2023-10-25 19:43 (UTC)
r-dnabarcodecompatibility 1.18.0-1 0 0.00 A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms BioArchLinuxBot 2023-10-25 22:06 (UTC)
r-diffloop 1.24.0-4 0 0.00 Identifying differential DNA loops from chromatin topology data BioArchLinuxBot 2022-11-04 06:35 (UTC)
r-conumee 1.36.0-1 0 0.00 Enhanced copy-number variation analysis using Illumina DNA methylation arrays BioArchLinuxBot 2023-10-27 13:37 (UTC)
r-comet 1.34.0-1 0 0.00 coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns BioArchLinuxBot 2023-10-27 14:53 (UTC)
r-cfdnapro 1.8.0-1 0 0.00 cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy BioArchLinuxBot 2023-10-27 11:42 (UTC)

145 packages found. Page 2 of 3.

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