r-seqlogo
|
1.68.0-2 |
0 |
0.00
|
Sequence logos for DNA sequence alignments |
BioArchLinuxBot
|
2024-03-07 12:11 (UTC) |
r-scope
|
1.14.0-1 |
0 |
0.00
|
A normalization and copy number estimation method for single-cell DNA sequencing |
BioArchLinuxBot
|
2023-10-27 11:31 (UTC) |
r-scmet
|
1.4.0-3 |
0 |
0.00
|
Bayesian modelling of cell-to-cell DNA methylation heterogeneity |
pekkarr
|
2024-02-08 13:59 (UTC) |
r-rprimer
|
1.6.0-1 |
0 |
0.00
|
Design Degenerate Oligos from a Multiple DNA Sequence Alignment |
pekkarr
|
2023-12-12 20:26 (UTC) |
r-reffreeewas
|
2.2-11 |
0 |
0.00
|
EWAS using Reference-Free DNA Methylation Mixture Deconvolution |
BioArchLinuxBot
|
2022-11-27 06:01 (UTC) |
r-recountmethylation
|
1.12.0-1 |
0 |
0.00
|
Access and analyze DNA methylation database compilations |
BioArchLinuxBot
|
2023-10-27 13:31 (UTC) |
r-qdnaseq
|
1.38.0-1 |
0 |
0.00
|
Quantitative DNA Sequencing for Chromosomal Aberrations |
BioArchLinuxBot
|
2023-10-26 07:52 (UTC) |
r-pscbs
|
0.67.0-1 |
0 |
0.00
|
Analysis of Parent-Specific DNA Copy Numbers |
BioArchLinuxBot
|
2024-02-18 00:02 (UTC) |
r-podcall
|
1.10.1-1 |
0 |
0.00
|
Positive Droplet Calling for DNA Methylation Droplet Digital PCR |
BioArchLinuxBot
|
2024-01-18 00:05 (UTC) |
r-plasmut
|
1.0.0-1 |
0 |
0.00
|
Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic |
pekkarr
|
2023-11-28 11:42 (UTC) |
r-planet
|
1.10.0-1 |
0 |
0.00
|
Placental DNA methylation analysis tools |
BioArchLinuxBot
|
2023-10-25 20:42 (UTC) |
r-periodicdna
|
1.12.0-1 |
0 |
0.00
|
Set of tools to identify periodic occurrences of k-mers in DNA sequences |
BioArchLinuxBot
|
2023-10-27 11:22 (UTC) |
r-nnnorm
|
2.66.0-1 |
0 |
0.00
|
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets |
BioArchLinuxBot
|
2023-10-26 07:01 (UTC) |
r-msa2dist
|
1.6.0-1 |
0 |
0.00
|
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis |
pekkarr
|
2023-10-26 02:35 (UTC) |
r-motifstack
|
1.46.0-1 |
0 |
0.00
|
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence |
BioArchLinuxBot
|
2023-10-27 13:18 (UTC) |
r-motifdb
|
1.44.0-1 |
0 |
0.00
|
An Annotated Collection of Protein-DNA Binding Sequence Motifs |
BioArchLinuxBot
|
2023-10-27 09:12 (UTC) |
r-motifcounter
|
1.26.0-1 |
0 |
0.00
|
R package for analysing TFBSs in DNA sequences |
BioArchLinuxBot
|
2023-10-26 03:00 (UTC) |
r-methylpipe
|
1.36.0-1 |
0 |
0.00
|
Base resolution DNA methylation data analysis |
BioArchLinuxBot
|
2023-10-27 15:02 (UTC) |
r-methylkit
|
1.28.0-1 |
0 |
0.00
|
DNA methylation analysis from high-throughput bisulfite sequencing results |
BioArchLinuxBot
|
2023-10-27 09:18 (UTC) |
r-methylclock
|
1.8.0-1 |
0 |
0.00
|
Methylclock - DNA methylation-based clocks |
BioArchLinuxBot
|
2023-10-28 13:41 (UTC) |
r-methylcc
|
1.16.0-1 |
0 |
0.00
|
Estimate the cell composition of whole blood in DNA methylation samples |
BioArchLinuxBot
|
2023-10-27 14:36 (UTC) |
r-methylaid
|
1.36.0-1 |
0 |
0.00
|
Visual and interactive quality control of large Illumina DNA Methylation array data sets |
BioArchLinuxBot
|
2023-10-27 13:26 (UTC) |
r-methreg
|
1.12.0-1 |
0 |
0.00
|
Assessing the regulatory potential of DNA methylation regions or sites on gene transcription |
BioArchLinuxBot
|
2023-10-27 09:00 (UTC) |
r-methped
|
1.30.0-1 |
0 |
0.00
|
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes |
BioArchLinuxBot
|
2023-10-25 22:57 (UTC) |
r-medips
|
1.54.0-1 |
0 |
0.00
|
DNA IP-seq data analysis |
BioArchLinuxBot
|
2023-10-27 11:19 (UTC) |
r-mbpcr
|
1.56.0-1 |
0 |
0.00
|
Bayesian Piecewise Constant Regression for DNA copy number estimation |
BioArchLinuxBot
|
2023-10-27 08:48 (UTC) |
r-mbamethyl
|
1.36.0-1 |
0 |
0.00
|
Model-based analysis of DNA methylation data |
BioArchLinuxBot
|
2023-10-25 18:26 (UTC) |
r-maigespack
|
1.64.0-2 |
0 |
0.00
|
Functions to handle cDNA microarray data, including several methods of data analysis |
BioArchLinuxBot
|
2024-02-11 18:05 (UTC) |
r-magar
|
1.10.0-1 |
0 |
0.00
|
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation and genotyping data |
BioArchLinuxBot
|
2023-10-28 15:04 (UTC) |
r-ledpred
|
1.36.0-1 |
0 |
0.00
|
Learning from DNA to Predict Enhancers |
BioArchLinuxBot
|
2023-10-25 20:53 (UTC) |
r-inetgrate
|
1.0.0-1 |
0 |
0.00
|
Integrates DNA methylation data with gene expression in a single gene network |
pekkarr
|
2023-11-25 11:22 (UTC) |
r-glad
|
2.66.0-1 |
0 |
0.00
|
Gain and Loss Analysis of DNA |
BioArchLinuxBot
|
2023-10-25 19:52 (UTC) |
r-genomautomorphism
|
1.4.0-1 |
0 |
0.00
|
Compute the automorphisms between DNA's Abelian group representations |
pekkarr
|
2023-11-30 20:20 (UTC) |
r-gdnax
|
1.0.2-1 |
0 |
0.00
|
Diagnostics for assessing genomic DNA contamination in RNA-seq data |
pekkarr
|
2024-03-20 18:17 (UTC) |
r-gdnainrnaseqdata
|
1.2.0-1 |
0 |
0.00
|
RNA-seq data with different levels of gDNA contamination |
pekkarr
|
2023-11-23 19:49 (UTC) |
r-fscanr
|
1.10.0-2 |
0 |
0.00
|
Detect Programmed Ribosomal Frameshifting Events from mRNA/cDNA BLASTX Output |
BioArchLinuxBot
|
2024-02-11 12:01 (UTC) |
r-frenchfish
|
1.14.0-1 |
0 |
0.00
|
Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections |
BioArchLinuxBot
|
2023-10-25 21:05 (UTC) |
r-fdb.infiniummethylation.hg19
|
2.2.0-3 |
0 |
0.00
|
Annotation package for Illumina Infinium DNA methylation probes |
BioArchLinuxBot
|
2022-06-06 01:34 (UTC) |
r-epimutacions
|
1.6.1-1 |
0 |
0.00
|
Robust outlier identification for DNA methylation data |
pekkarr
|
2023-12-09 10:40 (UTC) |
r-epimix
|
1.4.0-3 |
0 |
0.00
|
an integrative tool for the population-level analysis of DNA methylation |
pekkarr
|
2023-12-15 12:46 (UTC) |
r-enmix
|
1.38.01-1 |
0 |
0.00
|
Quality control and analysis tools for Illumina DNA methylation BeadChip |
BioArchLinuxBot
|
2023-10-27 14:44 (UTC) |
r-dnashaper
|
1.30.0-1 |
0 |
0.00
|
High-throughput prediction of DNA shape features |
BioArchLinuxBot
|
2023-10-26 02:39 (UTC) |
r-dnafusion
|
1.4.0-1 |
0 |
0.00
|
Identification of gene fusions using paired-end sequencing |
pekkarr
|
2023-11-30 13:35 (UTC) |
r-dnacopy
|
1.76.0-2 |
0 |
0.00
|
DNA Copy Number Data Analysis |
BioArchLinuxBot
|
2023-12-16 12:01 (UTC) |
r-dnabarcodes
|
1.32.0-1 |
0 |
0.00
|
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments |
BioArchLinuxBot
|
2023-10-25 19:43 (UTC) |
r-dnabarcodecompatibility
|
1.18.0-1 |
0 |
0.00
|
A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms |
BioArchLinuxBot
|
2023-10-25 22:06 (UTC) |
r-diffloop
|
1.24.0-4 |
0 |
0.00
|
Identifying differential DNA loops from chromatin topology data |
BioArchLinuxBot
|
2022-11-04 06:35 (UTC) |
r-conumee
|
1.36.0-1 |
0 |
0.00
|
Enhanced copy-number variation analysis using Illumina DNA methylation arrays |
BioArchLinuxBot
|
2023-10-27 13:37 (UTC) |
r-comet
|
1.34.0-1 |
0 |
0.00
|
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns |
BioArchLinuxBot
|
2023-10-27 14:53 (UTC) |
r-cfdnapro
|
1.8.0-1 |
0 |
0.00
|
cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy |
BioArchLinuxBot
|
2023-10-27 11:42 (UTC) |