dssp 
2.2.13 
1 
0.03 
Secondary structure assignment for proteins 
hseara

gausssum 
3.01 
3 
0.00 
A Program for getting results of Gaussian and GAMESS 
hseara

gromacs 
5.1.21 
12 
0.06 
A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. 
hseara

gromacs4.5complete 
4.5.71 
1 
0.00 
A versatile package to perform molecular dynamics. Last stable release of 4.5.x version series. Single and Double precision; Sources; Doxygen documentation 
hseara

gromacs4.6complete 
4.6.73 
1 
0.00 
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. 
hseara

gromacs5.0complete 
5.0.73 
1 
0.02 
A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. 
hseara

gromacs5.0completecharmm36 
2014112 
1 
0.02 
CHARMM36 force field in GROMACS format. 
hseara

gromacscharmm36 
2015061 
0 
0.00 
CHARMM36 force field in GROMACS format. 
hseara

gromacsplumed 
5.11 
1 
0.03 
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. (Plumed patched) 
hseara

g_lomepro 
1.0.22 
0 
0.00 
Local Membrane Property Analysis 
hseara

iep 
3.72 
26 
0.02 
Pronounced as 'eep'is a crossplatform Python IDE focused on interactivity and introspection, which makes it very suitable for scientific computing. Its practical design is aimed at simplicity and efficiency. 
hseara

plumed 
2.2.01 
2 
0.06 
An open source plugin for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. 
hseara

pythonalgopy 
0.5.31 
0 
0.00 
A tool for Algorithmic Differentiation (AD) and Taylor polynomial approximations. 
hseara

pythonmdtraj 
1.6.11 
2 
0.05 
A modern, open library for the analysis of molecular dynamics trajectories 
hseara

pythonmsmbuilder 
3.3.15 
0 
0.00 
A python package which implements a series of statistical models for highdimensional timeseries 
hseara

pythonnumdifftools 
0.9.141 
1 
0.39 
A suite of tools written in _Python to solve automatic numerical differentiation problems in one or more variables. 
hseara

pythonpyzolib 
0.3.41 
15 
0.19 
The pyzolib package provides basic functionality for the Pyzo environment. 
hseara

pythonscripttest 
1.31 
1 
0.03 
A library to help you test your interactive commandline applications 
hseara

python2algopy 
0.5.31 
0 
0.00 
A tool for Algorithmic Differentiation (AD) and Taylor polynomial approximations. 
hseara

python2espressopp 
1.9.21 
0 
0.00 
ESPResSo++ is an extensible, flexible, fast and parallel simulation software for soft matter research. 
hseara

python2griddataformats 
0.3.21 
1 
0.00 
The gridDataFormats package provides classes to unify reading and writing ndimensional datasets. One can read grid data from files, make them available as a Grid object, and allows one to write out the data again. 
hseara

python2mdanalysis 
0.14.01 
3 
0.03 
an objectoriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber. 
hseara

python2mdtraj 
1.6.11 
2 
0.05 
A modern, open library for the analysis of molecular dynamics trajectories 
hseara

python2msmbuilder 
3.3.15 
0 
0.00 
A python package which implements a series of statistical models for highdimensional timeseries 
hseara

python2numdifftools 
0.9.141 
1 
0.39 
A suite of tools written in _Python to solve automatic numerical differentiation problems in one or more variables. 
hseara

python2scripttest 
1.31 
1 
0.03 
A library to help you test your interactive commandline applications 
hseara

votcacsg 
1.31 
0 
0.00 
Versatile Objectoriented Toolkit for Coarsegraining Applications (VOTCA) is a package intended to reduce the amount of routine work when doing systematic coarsegraining of various systems. 
hseara

votcatools 
1.31 
0 
0.00 
Versatile Objectoriented Toolkit for Coarsegraining Applications (VOTCA) is a package intended to reduce the amount of routine work when doing systematic coarsegraining of various systems. (LIBRARY) 
hseara

wxmacmolplt 
7.61 
8 
0.00 
A moder graphics program for plotting 3D molecular structures and normal modes 
hseara
