|
bedtools
|
1:2.31.1-1 |
16 |
0.00
|
powerful toolset for genome arithmetic |
malacology
|
2024-01-16 20:38 (UTC) |
|
pvm
|
3.4.6-10 |
12 |
0.00
|
Parallel Virtual Machine |
malacology
|
2022-10-20 12:01 (UTC) |
|
seaview
|
5.0.5-8 |
11 |
0.00
|
GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 |
malacology
|
2022-09-03 01:59 (UTC) |
|
ekho
|
8.9.3-1 |
11 |
0.00
|
Multilingual text-to-speech (TTS) software for Cantonese, Mandarin, Toisanese, Zhaoan Hakka, Tibetan, Ngangien, Korean and English |
malacology
|
2023-06-25 09:48 (UTC) |
|
tophat
|
2.1.2-3 |
10 |
0.00
|
fast splice junction mapper for RNA-Seq reads |
malacology
|
2023-06-01 21:28 (UTC) |
|
picard-tools
|
3.1.1-1 |
8 |
0.00
|
set of tools for working with next generation sequencing data in the BAM format |
malacology
|
2023-11-15 00:03 (UTC) |
|
avogadroapp
|
1.99.0-2 |
7 |
0.16
|
An advanced molecular editor |
malacology
|
2024-02-12 17:24 (UTC) |
|
avida
|
2.14.0-2 |
6 |
0.00
|
A software platform to study evolution of digital organisms |
malacology
|
2022-08-28 22:17 (UTC) |
|
fastqc
|
0.12.1-4 |
5 |
0.00
|
A quality control tool for high throughput sequence data. |
malacology
|
2023-06-23 18:01 (UTC) |
|
beagle-lib
|
4.0.1-1 |
5 |
0.00
|
general purpose library for evaluating the likelihood of sequence evolution on trees |
malacology
|
2023-10-13 18:06 (UTC) |
|
notekit-git
|
r207.18b708d-1 |
4 |
0.00
|
A GTK3 hierarchical markdown notetaking application with tablet support. |
malacology
|
2022-06-16 12:05 (UTC) |
|
garlic
|
1.6-13 |
3 |
0.00
|
Molecular visualization program |
malacology
|
2023-04-04 19:03 (UTC) |
|
garlic-doc
|
1.6-13 |
3 |
0.00
|
Documentation for garlic |
malacology
|
2023-04-04 19:03 (UTC) |
|
exonerate
|
2.4.0-2 |
3 |
0.00
|
A general purpose tool for biological sequence comparison |
malacology
|
2024-02-13 04:43 (UTC) |
|
artemis
|
18.2.0-6 |
3 |
0.00
|
A genome viewer and annotation tool that visualizes biological sequence features |
malacology
|
2023-05-14 12:14 (UTC) |
|
notekit
|
0.2.0-1 |
2 |
0.00
|
A GTK3 hierarchical markdown notetaking application with tablet support. |
malacology
|
2022-12-18 14:18 (UTC) |
|
mrbayes-mpi
|
3.2.7-8 |
2 |
0.00
|
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. https://doi.org/10.1093/sysbio/sys029 |
malacology
|
2022-08-02 12:01 (UTC) |
|
microtex-git
|
2022.12.23-1 |
2 |
0.00
|
A dynamic, cross-platform, and embeddable LaTeX rendering library |
malacology
|
2023-03-25 06:49 (UTC) |
|
megax-bin
|
10.2.6-1 |
2 |
0.37
|
Molecular Evolutionary Genetics Analysis |
malacology
|
2021-06-12 01:37 (UTC) |
|
iqtree
|
2.3.2-1 |
2 |
0.00
|
Efficient phylogenomic software by maximum likelihood https://doi.org/10.1093/molbev/msaa015 |
malacology
|
2024-04-11 12:11 (UTC) |
|
cufflinks
|
2.2.2.20190706.162801-2 |
2 |
0.00
|
Transcriptome assembly and differential expression analysis for RNA-Seq. |
malacology
|
2023-06-01 21:03 (UTC) |
|
biobambam
|
2.0.185_release_20221211202123-1 |
2 |
0.00
|
BAM file pre-processing utilities for bioinformatics. |
malacology
|
2022-12-12 00:13 (UTC) |
|
winclada
|
2.0-1 |
1 |
0.00
|
Winclada‐ASADO |
malacology
|
2022-03-04 18:53 (UTC) |
|
typecho
|
1.2.1-1 |
1 |
0.00
|
A PHP Blogging Platform |
malacology
|
2023-10-06 15:08 (UTC) |
|
tracer-bin
|
1.7.2-1 |
1 |
0.00
|
Posterior summarisation in Bayesian phylogenetics |
malacology
|
2022-10-14 07:13 (UTC) |
|
tnt-bio
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
|
tnt-mpi
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
|
tnt-gui
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
|
tnt-extra
|
1.6-1 |
1 |
0.00
|
Tree analysis using New Technology. https://doi.org/10.1111/cla.12160 |
malacology
|
2023-04-24 06:47 (UTC) |
|
speciesidentifier
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
|
sequencematrix
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
|
genbankexplorer
|
1.9-6 |
1 |
0.00
|
Taxonomy-aware DNA sequence processing toolkit |
malacology
|
2022-12-04 01:53 (UTC) |
|
revbayes-mpi
|
1.2.2-1 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2023-06-10 05:23 (UTC) |
|
revbayes
|
1.2.2-1 |
1 |
0.00
|
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 |
malacology
|
2023-06-10 05:44 (UTC) |
|
raxmlgui
|
2.0.10-2 |
1 |
0.00
|
A new user-friendly program integrating RAxML-NG and ModelTest-NG for cutting-edge phylogenetic analysis. https://doi.org/10.1111/2041-210X.13512 |
malacology
|
2023-12-05 00:03 (UTC) |
|
raxml-ng
|
1.2.1-1 |
1 |
0.00
|
A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 |
malacology
|
2023-12-22 18:11 (UTC) |
|
python-ete3
|
3.1.3-1 |
1 |
0.00
|
A Python Environment for (phylogenetic) Tree Exploration |
malacology
|
2023-05-02 12:02 (UTC) |
|
phylobayes-mpi
|
1.9-1 |
1 |
0.00
|
phylogenetic reconstruction using infinite mixtures. https://doi.org/10.1093/molbev/msh112 |
malacology
|
2022-10-16 08:44 (UTC) |
|
phylobayes
|
4.1e-1 |
1 |
0.00
|
phylogenetic reconstruction using infinite mixtures |
malacology
|
2021-05-15 13:14 (UTC) |
|
paup-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For PAUP* |
malacology
|
2021-05-06 08:47 (UTC) |
|
open-delta
|
1:1.0.3_beta-1 |
1 |
0.00
|
DEscription Language of TAxonomy |
malacology
|
2023-04-25 19:25 (UTC) |
|
nona
|
2014.03.10-5 |
1 |
0.00
|
NONA: a bastard son of Pee-Wee. Phylogenetic Analysis Software |
malacology
|
2023-07-21 07:08 (UTC) |
|
mrbayes-mpi-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For MrBayes MPI |
malacology
|
2021-05-07 06:07 (UTC) |
|
mrbayes-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For MrBayes |
malacology
|
2021-05-06 08:28 (UTC) |
|
morphoj
|
1.08.01-2 |
1 |
0.00
|
integrated program package for doing geometric morphometrics https://doi.org/10.1111/j.1755-0998.2010.02924.x |
malacology
|
2023-10-26 06:07 (UTC) |
|
mega
|
11.0.13-3 |
1 |
0.00
|
Molecular Evolutionary Genetics Analysis. https://doi.org/10.1093/molbev/msy096 |
malacology
|
2023-04-04 19:30 (UTC) |
|
mafft-desktop
|
1.0-1 |
1 |
0.00
|
Desktop File For MAFFT |
malacology
|
2021-05-06 08:31 (UTC) |
|
libmaus
|
2.0.812_release_20220919125234-3 |
1 |
0.00
|
Bioinformatics data structures and algorithms in C++ |
malacology
|
2022-10-19 16:35 (UTC) |
|
jmodeltest
|
2.1.10r20160303-7 |
1 |
0.00
|
Phylogenetic Model Averaging, more models, new heuristics and high-performance computing. https://doi.org/10.1093/molbev/msn083 |
malacology
|
2022-08-29 21:04 (UTC) |
|
gffread
|
0.12.7-2 |
1 |
0.00
|
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more |
malacology
|
2022-04-17 21:51 (UTC) |