92 packages found. Page 2 of 2.

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Name Version Votes Popularity? Description Maintainer Last Updated
phylosuite 1.2.3-2 0 0.00 an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. https://doi.org/10.1111/1755-0998.13096 malacology 2023-04-04 19:09 (UTC)
plumed 2.8.2-1 3 0.00 An open source plugin for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. hseara 2023-05-19 09:30 (UTC)
plumed-mpi 2.8.2-1 1 0.00 An open source plugin for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines (with MPI support) Tenshi65535 2023-05-23 01:24 (UTC)
psi3-bin 3.4.0.6-3 0 0.00 An open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models. (Debian binary build) berquist 2023-06-24 18:49 (UTC)
pteros 2.8.r144.g2965c2b0-1 0 0.00 C++ library for molecular modeling. burning_daylight 2021-03-24 13:34 (UTC)
pymol-git r5639.ca185848f-1 1 0.00 Molecular visualization system on an Open Source foundation brisvag 2024-03-12 11:01 (UTC)
python-chemview-git 0.7.r10.g2c9768d-1 0 0.00 An interactive molecular viewer for the IPython notebook (git version) orphan 2022-07-30 18:33 (UTC)
python-mdanalysis 2.6.1-1 1 0.00 An object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber. hseara 2023-11-17 18:28 (UTC)
python-mdtraj 1.9.7-1 4 0.00 A modern, open library for the analysis of molecular dynamics trajectories hseara 2022-01-06 12:01 (UTC)
python-mmtf 1.1.2-1 0 0.00 The macromolecular transmission format (MMTF) is a binary encoding of biological structures. hseara 2021-01-20 21:26 (UTC)
python-molmass 2023.8.30-1 0 0.00 Molecular mass calculations dviktor 2024-01-14 15:10 (UTC)
python-morfeus-ml 0.7.2-1 0 0.00 A Python package for calculating molecular features AnnaBruenisholz 2024-03-18 09:02 (UTC)
python-pdb2pqr 3.6.2-1 1 0.00 Automates many of the common tasks of preparing structures for continuum solvation calculations as well as many other types of biomolecular structure modeling, analysis, and simulation. willemsk 2024-01-10 16:03 (UTC)
python-pyberny 0.6.3-1 0 0.00 Molecular/crystal structure optimizer AnnaBruenisholz 2024-03-18 09:16 (UTC)
qtltools 1.3.1-8 0 0.00 A complete tool set for molecular QTL discovery and analysis. https://doi.org/10.1038/ncomms15452 kbipinkumar 2023-08-28 06:07 (UTC)
r-aims 1.34.0-1 0 0.00 AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype BioArchLinuxBot 2023-10-25 23:11 (UTC)
r-cancerclass 1.46.0-1 0 0.00 Development and validation of diagnostic tests from high-dimensional molecular data BioArchLinuxBot 2023-10-25 23:04 (UTC)
r-mdp 1.22.0-1 0 0.00 Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls BioArchLinuxBot 2023-10-25 20:48 (UTC)
r-mosbi 1.8.0-3 0 0.00 Molecular Signature identification using Biclustering BioArchLinuxBot 2024-02-08 12:17 (UTC)
r-msigdb 1.10.0-1 0 0.00 An ExperimentHub Package for the Molecular Signatures Database (MSigDB) BioArchLinuxBot 2023-10-27 05:32 (UTC)
r-nglviewer 1.3.1-1 0 0.00 Interactive 3D Visualization of Molecular Structures BioArchLinuxBot 2023-04-29 04:46 (UTC)
r-pathrender 1.70.0-1 0 0.00 Render molecular pathways BioArchLinuxBot 2023-10-26 04:14 (UTC)
r-qpgraph 2.36.0-1 0 0.00 Estimation of genetic and molecular regulatory networks from high-throughput genomics data BioArchLinuxBot 2023-10-27 10:47 (UTC)
r-rcellminer 2.24.0-1 0 0.00 rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines BioArchLinuxBot 2023-10-26 00:52 (UTC)
r-rcellminerdata 2.24.0-1 0 0.00 rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines BioArchLinuxBot 2023-10-27 02:26 (UTC)
r-rcpi 1.38.0-3 0 0.00 Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery BioArchLinuxBot 2023-10-27 05:11 (UTC)
r-stattarget 1.32.0-1 0 0.00 Statistical Analysis of Molecular Profiles BioArchLinuxBot 2023-10-25 22:08 (UTC)
r-tcgabiolinksgui 1.23.0-4 0 0.00 "TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data" BioArchLinuxBot 2023-04-29 07:09 (UTC)
r-tnbc.cms 1.18.0-1 0 0.00 TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes BioArchLinuxBot 2023-10-30 18:33 (UTC)
r-triplex 1.42.0-1 0 0.00 Search and visualize intramolecular triplex-forming sequences in DNA BioArchLinuxBot 2023-10-26 03:06 (UTC)
rasmol-gtk 2.7.5.2-2 2 0.00 A program for molecular graphics visualisation (aka openrasmol) leepesjee 2015-12-03 00:48 (UTC)
seaview 5.0.5-8 11 0.00 GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 malacology 2022-09-03 01:59 (UTC)
smoldyn 2.71-1 0 0.00 particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions orphan 2023-06-28 22:01 (UTC)
tachyon-opengl 0.99b6-3 0 0.00 Parallel ray tracer (used as part of Visual Molecular Dynamics), OpenGL-enabled orphan 2016-02-17 21:30 (UTC)
tempest-bin 1.5.3-1 0 0.00 a tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies malacology 2021-05-27 05:31 (UTC)
ucsf-chimera 1.16-1 15 0.00 Extensible molecular modeling system Athemis 2022-03-14 11:11 (UTC)
vmd 1.9.4a57-1 20 0.00 Visual Molecular Dynamics (official binary build) berquist 2023-06-10 01:50 (UTC)
vmd-bin 1.9.4a57-1 0 0.00 VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting tzok 2023-04-17 07:12 (UTC)
vmd-molfile-plugins 1.9.4a55-1 0 0.00 Visual Molecular Dynamics - molfile plugins orphan 2022-01-21 05:59 (UTC)
vmd-src 1.9.4a57-3 2 0.00 Visual Molecular Dynamics a.kudelin 2023-06-01 08:51 (UTC)
xcrysden 1.6.2-2 6 0.00 crystalline and molecular structure visualisation program specter119 2020-06-03 08:59 (UTC)
yaehmop 3.1.0b2-4 0 0.00 Yet Another extended Huckel Molecular Orbital Package (YAeHMOP) lantw44 2021-04-10 17:53 (UTC)

92 packages found. Page 2 of 2.

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