17 packages found. Page 1 of 1.

Name Version Votes Popularity? Description Maintainer
beads 1.1-1 0 0.00 Bias Elimination Algorithm for Deep Sequencing. sauliusl
chromasig-seq 1.0-1 0 0.00 ChromaSig is an unsupervised learning method to search for common patterns (motifs) of histone modifications. Chromasig was proposed by Gary Hon et al sauliusl
fseq 1.84-1 1 0.00 software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser sauliusl
pash-mapper 3.01.01-2 0 0.00 A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing sauliusl
perl-math-cdf 0.1-1 0 0.00 Generate probabilities and quantiles from several statistical probability functions sauliusl
phantompeakqualtools 1.1-1 0 0.00 Computes quick but highly informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays. sauliusl
r-biocgenerics 0.20.0-1 0 0.00 S4 generic functions needed by many Bioconductor packages. sauliusl
r-catools 1.17.1-1 0 0.00 Moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc. sauliusl
r-iranges 2.8.1-1 0 0.00 Infrastructure for manipulating intervals on sequences sauliusl
r-methodss3 1.7.0-1 0 0.00 Methods that simplify the setup of S3 generic functions and S3 methods. sauliusl
r-oo 1.19.0-1 0 0.00 Methods and classes for object-oriented programming in R with or without references. sauliusl
r-s4vectors 0.12.1-1 0 0.00 S4 implementation of vectors and lists sauliusl
r-snow 0.3_13-1 0 0.00 Support for simple parallel computing in R. sauliusl
r-utils 2.0.0-1 0 0.00 Utility functions useful when programming and developing R packages. sauliusl
rseg 0.4.4-1 0 0.00 The RSEG software package is aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. sauliusl
scythe-git 133.20d3cff-1 1 0.00 A Bayesian adapter trimmer sauliusl
sratoolkit 2.8.2_1-1 3 0.00 A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions sauliusl

17 packages found. Page 1 of 1.