| none |
r-catools |
1.17.1-1 |
0 |
Moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc. |
sauliusl
|
| lib |
r-methodss3 |
1.7.0-1 |
0 |
Methods that simplify the setup of S3 generic functions and S3 methods. |
sauliusl
|
| lib |
r-oo |
1.19.0-1 |
0 |
Methods and classes for object-oriented programming in R with or without references. |
sauliusl
|
| lib |
r-snow |
0.3_13-1 |
0 |
Support for simple parallel computing in R. |
sauliusl
|
| lib |
r-utils |
2.0.0-1 |
0 |
Utility functions useful when programming and developing R packages. |
sauliusl
|
| science |
beads |
1.1-1 |
0 |
Bias Elimination Algorithm for Deep Sequencing. |
sauliusl
|
| science |
chromasig-seq |
1.0-1 |
0 |
ChromaSig is an unsupervised learning method to search for common patterns (motifs) of histone modifications. Chromasig was proposed by Gary Hon et al |
sauliusl
|
| science |
fseq |
1.84-1 |
0 |
software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser |
sauliusl
|
| science |
pash-mapper |
3.01.01-2 |
0 |
A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing |
sauliusl
|
| science |
perl-math-cdf |
0.1-1 |
0 |
Generate probabilities and quantiles from several statistical probability functions |
sauliusl
|
| science |
phantompeakqualtools |
1.1-1 |
0 |
Computes quick but highly informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays. |
sauliusl
|
| science |
scythe-git |
133.20d3cff-1 |
0 |
A Bayesian adapter trimmer |
sauliusl
|
| science |
sratoolkit |
2.5.2-1 |
1 |
A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions |
sauliusl
|
| system |
rseg |
0.4.4-1 |
0 |
The RSEG software package is aimed to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3. |
sauliusl
|