69 packages found. Page 1 of 2.

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Name Version Votes Popularity? Description Maintainer
allpathslg 51875-1 1 0.00 short read genome assembler wookietreiber
bamtools 2.4.0-1 3 0.06 C++ API & command-line toolkit for working with BAM data wookietreiber
bcftools 1.3.1-1 5 0.50 Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants wookietreiber
beagle-lib 1:2.1.2-2 5 0.61 general purpose library for evaluating the likelihood of sequence evolution on trees wookietreiber
beagle-lib-git r1040.c455af1-1 2 0.01 general purpose library for evaluating the likelihood of sequence evolution on trees wookietreiber
beast2 2.4.0-1 4 0.00 Bayesian Evolutionary Analysis by Sampling Trees wookietreiber
blasr-git r122.9593a09-1 1 0.00 The PacBio long read aligner wookietreiber
blast+ 2.3.0-1 4 0.23 finds regions of similarity between biological sequences wookietreiber
bucky 1.4.4-1 2 0.00 bayesian concordance analysis wookietreiber
bwa 0.7.13-1 9 0.38 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome wookietreiber
cd-hit 4.6.5-1 3 0.09 clustering DNA/protein sequence database at high identity with tolerance wookietreiber
cgames 2.2-6 15 0.09 Collection of three ncurses games. csokoban (sokoban), cmines (minesweeper) and cblocks (sliding-block puzzles). wookietreiber
cmfinder 0.2-2 1 0.00 A Covariance Model Based RNA Motif Finding Algorithm wookietreiber
dbg2olc-bin 1.0-1 1 0.00 Efficient Assembly of Large Genomes Using the Compressed Overlap Graph wookietreiber
dwarffortress-ironhand 0.42.06-1 2 0.26 A single-player fantasy game. You control a dwarven outpost or an adventurer in a randomly generated persistent world. wookietreiber
edena 3.131028-1 1 0.00 de novo short reads assembler wookietreiber
exabayes 1.4.1-2 1 0.00 bayesian tree inference wookietreiber
exabayes-mpi 1.4.1-1 1 0.00 bayesian tree inference wookietreiber
freeorion 0.4.5-1 2 1.02 turn-based space empire and galactic conquest (4X) computer game wookietreiber
graphclust 0.7.6-2 1 0.00 structural clustering of RNA sequences wookietreiber
hapsembler 2.21-1 1 0.00 haplotype-specific genome assembly toolkit wookietreiber
htslib 1.3.1-1 11 0.56 library for high-throughput sequencing data formats wookietreiber
icat 0.4-1 4 0.62 outputs images in 256-color capable terminals wookietreiber
idba 1.1.2-1 1 0.00 iterative de Bruijn graph assembler wookietreiber
image-bin 2.4.1-2 1 0.00 Iterative Mapping and Assembly for Gap Elimination wookietreiber
irssi-libnotify-git r42.74198b5-1 19 0.50 libnotify plugin for irssi wookietreiber
lib32-js 24.2.0-2 58 0.00 JavaScript interpreter and libraries (32-bit) wookietreiber
locarna 1.8.7-1 1 0.00 Global and Local Alignment of RNAs wookietreiber
modules 3.2.10-1 9 0.12 The Environment Modules package provides for the dynamic modification of a user's environment via modulefiles wookietreiber
mrbayes-mpi 3.2.5-2 1 0.00 Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models wookietreiber
musket 1.1-1 1 0.00 a parallel short-read error corrector for Illumina sequencing wookietreiber
nfs4-acl-tools 0.3.3-1 6 0.00 commandline ACL utilities for the Linux NFSv4 client wookietreiber
openmpi-slurm 1.8.4-1 2 0.00 High performance message passing library (MPI) wookietreiber
partitionfinder 1.1.1-1 1 0.00 discovers optimal partitioning schemes for DNA sequences wookietreiber
pbdagcon-git r62.a6790e2-1 1 0.00 sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment wookietreiber
phylobayes 4.1b-1 1 0.00 phylogenetic reconstruction using infinite mixtures wookietreiber
phylobayes-mpi 1.5a-1 1 0.00 phylogenetic reconstruction using infinite mixtures wookietreiber
phyml-beagle 1:3.2.0-1 1 0.00 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
phyml-beagle-git r121.ab59039-1 2 0.02 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
phyml-git r121.ab59039-1 2 0.02 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
phyml-mpi-git r751.3b3d7a5-1 2 0.56 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
picard-tools 2.4.1-1 5 0.18 set of tools for working with next generation sequencing data in the BAM format wookietreiber
pixz-git r206.8d318b9-1 14 0.83 parallel, indexed xz compressor wookietreiber
proovread 2.12-4 1 0.00 large-scale high accuracy PacBio correction through iterative short read consensus wookietreiber
python-cutadapt 1.10-1 2 0.00 trim adapters from high-throughput sequencing reads wookietreiber
python2-cutadapt 1.10-1 1 0.00 trim adapters from high-throughput sequencing reads wookietreiber
python2-htseq 0.6.1-1 2 0.00 framework to process and analyze data from high-throughput sequencing assays wookietreiber
rapsearch 2.23-2 1 0.00 Reduced Alphabet based Protein similarity Search wookietreiber
raxml 8.2.6-1 1 0.00 Randomized Axelerated Maximum Likelihood wookietreiber
raxml-mpi 8.2.6-1 1 0.00 Randomized Axelerated Maximum Likelihood wookietreiber

69 packages found. Page 1 of 2.

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