69 packages found. Page 1 of 2.

1 2 Next › Last »

Name Version Votes Popularity? Description Maintainer
allpathslg 51875-1 1 0.00 short read genome assembler wookietreiber
bamtools 2.4.0-1 3 0.12 C++ API & command-line toolkit for working with BAM data wookietreiber
bcftools 1.3-3 5 0.98 Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants wookietreiber
beagle-lib 1:2.1.2-2 4 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees wookietreiber
beagle-lib-git r1040.c455af1-1 2 0.01 general purpose library for evaluating the likelihood of sequence evolution on trees wookietreiber
beast2 2.4.0-1 4 0.01 Bayesian Evolutionary Analysis by Sampling Trees wookietreiber
blasr-git r122.9593a09-1 1 0.00 The PacBio long read aligner wookietreiber
blast+ 2.3.0-1 4 0.46 finds regions of similarity between biological sequences wookietreiber
bucky 1.4.4-1 2 0.00 bayesian concordance analysis wookietreiber
bwa 0.7.13-1 9 0.75 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome wookietreiber
cd-hit 4.6.5-1 3 0.18 clustering DNA/protein sequence database at high identity with tolerance wookietreiber
cgames 2.2-6 15 0.17 Collection of three ncurses games. csokoban (sokoban), cmines (minesweeper) and cblocks (sliding-block puzzles). wookietreiber
cmfinder 0.2-2 1 0.00 A Covariance Model Based RNA Motif Finding Algorithm wookietreiber
dbg2olc-bin 1.0-1 1 0.00 Efficient Assembly of Large Genomes Using the Compressed Overlap Graph wookietreiber
dwarffortress-ironhand 0.42.06-1 2 0.52 A single-player fantasy game. You control a dwarven outpost or an adventurer in a randomly generated persistent world. wookietreiber
edena 3.131028-1 1 0.00 de novo short reads assembler wookietreiber
exabayes 1.4.1-2 1 0.00 bayesian tree inference wookietreiber
exabayes-mpi 1.4.1-1 1 0.00 bayesian tree inference wookietreiber
freeorion 0.4.5-1 1 0.25 turn-based space empire and galactic conquest (4X) computer game wookietreiber
graphclust 0.7.6-2 1 0.00 structural clustering of RNA sequences wookietreiber
hapsembler 2.21-1 1 0.00 haplotype-specific genome assembly toolkit wookietreiber
htslib 1.3-2 11 1.09 library for high-throughput sequencing data formats wookietreiber
icat 0.4-1 3 0.22 outputs images in 256-color capable terminals wookietreiber
idba 1.1.2-1 1 0.00 iterative de Bruijn graph assembler wookietreiber
image-bin 2.4.1-2 1 0.00 Iterative Mapping and Assembly for Gap Elimination wookietreiber
irssi-libnotify-git r42.74198b5-1 19 0.98 libnotify plugin for irssi wookietreiber
lib32-js 24.2.0-2 58 0.00 JavaScript interpreter and libraries (32-bit) wookietreiber
locarna 1.8.7-1 1 0.00 Global and Local Alignment of RNAs wookietreiber
modules 3.2.10-1 9 0.24 The Environment Modules package provides for the dynamic modification of a user's environment via modulefiles wookietreiber
mrbayes-mpi 3.2.5-2 1 0.00 Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models wookietreiber
musket 1.1-1 1 0.00 a parallel short-read error corrector for Illumina sequencing wookietreiber
nfs4-acl-tools 0.3.3-1 6 0.00 commandline ACL utilities for the Linux NFSv4 client wookietreiber
openmpi-slurm 1.8.4-1 2 0.00 High performance message passing library (MPI) wookietreiber
partitionfinder 1.1.1-1 1 0.00 discovers optimal partitioning schemes for DNA sequences wookietreiber
pbdagcon-git r62.a6790e2-1 1 0.00 sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment wookietreiber
phylobayes 4.1b-1 1 0.00 phylogenetic reconstruction using infinite mixtures wookietreiber
phylobayes-mpi 1.5a-1 1 0.00 phylogenetic reconstruction using infinite mixtures wookietreiber
phyml-beagle 20141029-1 1 0.00 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
phyml-beagle-git r121.ab59039-1 2 0.05 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
phyml-git r121.ab59039-1 2 0.05 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
phyml-mpi-git r121.ab59039-1 1 0.00 Phylogenetic estimation using (Maximum) Likelihood wookietreiber
picard-tools 2.1.1-1 5 0.36 set of tools for working with next generation sequencing data in the BAM format wookietreiber
pixz-git r206.8d318b9-1 13 0.00 parallel, indexed xz compressor wookietreiber
proovread 2.12-4 1 0.00 large-scale high accuracy PacBio correction through iterative short read consensus wookietreiber
python-cutadapt 1.8.1-1 2 0.00 trim adapters from high-throughput sequencing reads wookietreiber
python2-cutadapt 1.8.1-1 1 0.00 trim adapters from high-throughput sequencing reads wookietreiber
python2-htseq 0.6.1-1 2 0.00 framework to process and analyze data from high-throughput sequencing assays wookietreiber
rapsearch 2.23-2 1 0.00 Reduced Alphabet based Protein similarity Search wookietreiber
raxml 8.2.6-1 1 0.00 Randomized Axelerated Maximum Likelihood wookietreiber
raxml-mpi 8.2.6-1 1 0.00 Randomized Axelerated Maximum Likelihood wookietreiber

69 packages found. Page 1 of 2.

1 2 Next › Last »