91275 packages found. Page 801 of 1826.

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Name Version Votes Popularity? Description Maintainer Last Updated
python-dnaio 1.2.0-1 0 0.00 Python library for very efficient parsing and writing of FASTQ and FASTA files kbipinkumar 2023-12-11 18:26 (UTC)
pyabpoa 1.5.1-1 0 0.00 python bindings for abpoa kbipinkumar 2024-01-16 06:03 (UTC)
perl-file-share 0.27-1 0 0.00 Extend File::ShareDir to Local Libraries kbipinkumar 2022-12-05 14:33 (UTC)
parafly 0.1.0-1 0 0.00 parallel command processing using OpenMP kbipinkumar 2023-04-23 09:48 (UTC)
outils 0.13-1 0 0.00 A port of some non-standard OpenBSD tools to Linux kbipinkumar 2023-10-20 18:03 (UTC)
oligoarrayaux 3.8.1-1 0 0.00 A subset of the UNAFold package for use with OligoArray kbipinkumar 2023-03-07 04:34 (UTC)
nthash-bcgsc 2.3.0-3 0 0.00 Fast hash function for DNA/RNA sequences. https://doi.org/10.1093/bioinformatics/btac564 kbipinkumar 2023-11-09 00:01 (UTC)
nanostat 1.6.0-1 0 0.00 Create statistic summary of an Oxford Nanopore read dataset kbipinkumar 2023-08-05 09:06 (UTC)
nanoqc 0.9.4-1 0 0.00 Create fastQC-like plots for Oxford Nanopore sequencing data kbipinkumar 2023-08-06 05:29 (UTC)
nanomath 1.3.0-2 0 0.00 simple math function for other Oxford Nanopore processing scripts kbipinkumar 2023-08-05 06:03 (UTC)
nanoget 1.19.3-1 0 0.00 Functions to extract useful metrics from Oxford Nanopore sequencing reads and alignments kbipinkumar 2023-09-20 00:01 (UTC)
mutmap 2.3.4-1 0 0.00 Pipeline to identify causative mutations responsible for a phenotype. https://doi.org/10.7717/peerj.13170 kbipinkumar 2023-09-13 00:02 (UTC)
mmseqs2-sse4 15.6f452-2 0 0.00 ultra fast and sensitive search and clustering suite optimised for SSE4 instructions. https://doi.org/10.1038/nbt.3988 kbipinkumar 2023-11-14 06:10 (UTC)
mmseqs2-avx2 15.6f452-2 0 0.00 ultra fast and sensitive search and clustering suite optimised for AVX2 instructions. https://doi.org/10.1038/nbt.3988 kbipinkumar 2023-11-14 06:10 (UTC)
mhap 2.1.3-2 0 0.00 A locality-sensitive hashing to detect long-read overlaps. https://doi.org/10.1038/nbt.3238 kbipinkumar 2023-06-23 18:02 (UTC)
mashmap 3.1.3-1 0 0.00 Fast approximate aligner for long DNA sequences kbipinkumar 2024-01-04 18:02 (UTC)
lollipops 1.7.1-1 0 0.00 Lollipop-style mutation diagrams for annotating genetic variations. https://doi.org/10.1371/journal.pone.0160519 kbipinkumar 2023-10-05 06:01 (UTC)
libxtend 0.2.0-1 0 0.00 A library of miscellaneous generic C functions kbipinkumar 2023-10-23 18:03 (UTC)
kraken2 2.1.3-1 0 0.00 Improved vesion of kraken ultrafast metagenomic sequence classification tool. https://doi.org/10.1186/s13059-019-1891-0 kbipinkumar 2023-06-07 12:01 (UTC)
hifiasm 0.19.8-1 0 0.00 Haplotype-resolved de novo assembler for PacBio Hifi reads. https://doi.org/10.1038/s41592-020-01056-5 kbipinkumar 2023-11-06 06:02 (UTC)
gri 20200626.145814-1 2 0.00 A script-based language for scientific graphics programming kbipinkumar 2023-02-12 00:03 (UTC)
generand 0.1.2-3 0 0.00 Simple and fast tool for generating random genomic data in common formats for testing and benchmarking purposes kbipinkumar 2023-06-11 15:16 (UTC)
flair 2.0.0-1 0 0.00 Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads kbipinkumar 2023-06-14 00:01 (UTC)
fastq-trim 0.1.3-1 0 0.00 Lightening fast read trimmer kbipinkumar 2023-10-24 18:03 (UTC)
fastani 1.34-1 0 0.00 Fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). kbipinkumar 2023-07-31 00:01 (UTC)
fastahack 1.0.0-3 0 0.00 utilities for indexing and sequence extraction from FASTA files kbipinkumar 2023-06-02 00:01 (UTC)
fasda 0.1.5-1 0 0.00 Fast And Simple Differential Analysis of transcriptomic data kbipinkumar 2023-10-24 18:02 (UTC)
estscan-doc 3.0.3-2 0 0.00 Documentation for estscan kbipinkumar 2023-04-15 18:01 (UTC)
estscan 3.0.3-2 0 0.00 ORF-independent detector of coding DNA sequences kbipinkumar 2023-04-15 18:01 (UTC)
cutadapt 4.7-1 0 0.00 Remove adapter sequences from high-throughput sequencing reads. doi:10.14806/ej.17.1.200 kbipinkumar 2024-03-14 18:15 (UTC)
cramino 0.14.5-1 0 0.00 A fast tool for BAM/CRAM quality evaluation of long reads. https://doi.org/10.1093/bioinformatics/btad311 kbipinkumar 2024-02-27 18:06 (UTC)
codonw 1.4.4-2 0 0.00 Multivariate analysis (correspondence analysis) of codon and amino acid usage kbipinkumar 2023-04-02 06:01 (UTC)
chopper 0.7.0-1 0 0.00 Rust implementation of NanoFilt+NanoLyse intended for long read sequencing kbipinkumar 2023-11-10 00:03 (UTC)
centrifuge 1.0.4.1-1 1 0.00 Rapid and memory-efficient tool for classification of metagenomic sequences kbipinkumar 2024-02-01 18:02 (UTC)
cdbfasta-git r4.014498c-1 0 0.00 CDB (Constant DataBase) indexing and retrieval tools for FASTA files kbipinkumar 2022-11-30 13:08 (UTC)
bustools 0.43.2-1 0 0.00 Program for manipulating BUS files for single cell RNA-Seq datasets. doi:10.1038/s41587-021-00870-2 kbipinkumar 2024-01-04 12:09 (UTC)
bracken 2.9-1 0 0.00 Bayesian Reestimation of Abundance with KrakEN. https://doi.org/10.7717/peerj-cs.104 kbipinkumar 2023-09-21 00:02 (UTC)
biolibc 0.2.6-1 0 0.00 High-performance, memory-efficient bioinformatics library kbipinkumar 2023-10-23 18:04 (UTC)
augustus 3.5.0-5 0 0.00 A eukaryotic gene prediction program kbipinkumar 2023-06-11 18:09 (UTC)
any2fasta 0.4.2-1 0 0.00 convert various sequence formats to FASTA kbipinkumar 2023-05-08 13:57 (UTC)
amrfinderplus 3.12.8-2 0 0.00 Identify Antimicrobial resistance genes in assembled bacterial nucleotide and protein sequence. https://doi.org/10.1038/s41598-021-91456-0 kbipinkumar 2024-03-03 18:02 (UTC)
allelecount 4.3.0-1 0 0.00 program for estimating the NGS copy number kbipinkumar 2023-05-09 09:51 (UTC)
alevin-fry 0.9.0-1 0 0.00 A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data kbipinkumar 2024-03-09 00:03 (UTC)
agat 1.3.3-1 0 0.00 Another Gtf/Gff Analysis Toolkit is a suite of tools to handle gene annotations in GTF/GFF format. doi:10.5281/zenodo.3552717 kbipinkumar 2024-03-28 18:04 (UTC)
aevol 5.0-2 0 0.00 an open-source digital genetics platform that captures the evolutionary process kbipinkumar 2023-05-09 05:59 (UTC)
adapterremoval 2.3.3-2 0 0.00 Remove remnant adapter sequences from High-Throughput Sequencing (HTS) data and trim low quality bases from the 3 prime end kbipinkumar 2023-04-02 06:02 (UTC)
ad2vcf 0.1.6-6 0 0.00 Tool to add allelic depth info from a SAM stream to a VCF file kbipinkumar 2023-02-12 12:03 (UTC)
abpoa 1.5.1-1 0 0.00 SIMD-based C library for fast partial order alignment. https://dx.doi.org/10.1093/bioinformatics/btaa963 kbipinkumar 2024-01-16 06:03 (UTC)
soapyairspyhf-git 2:r28.b6cfbf5-1 0 0.00 SoapySDR plugin for Airspy HF+ kbeckmann 2023-04-10 01:02 (UTC)
gds3d-git r38.173da0c-1 0 0.00 An application used for rendering IC (chip) layouts in 3D kbeckmann 2023-04-10 01:01 (UTC)

91275 packages found. Page 801 of 1826.

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