91013 packages found. Page 1127 of 1821.

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Name Version Votes Popularity? Description Maintainer Last Updated
avida 2.14.0-2 6 0.00 A software platform to study evolution of digital organisms malacology 2022-08-28 22:17 (UTC)
avogadroapp 1.99.0-2 7 0.32 An advanced molecular editor malacology 2024-02-12 17:24 (UTC)
bamm 2.5.0-1 0 0.00 A program for multimodel inference on speciation and trait evolution https://doi.org/10.1038/ncomms2958 malacology 2022-11-02 14:23 (UTC)
bayarea 1.0.3-1 0 0.00 Bayesian inference of historical biogeography for many discrete areas https://doi.org/10.1093/sysbio/syt040 malacology 2023-02-10 18:50 (UTC)
bayestraits 4.1.1-1 0 0.00 A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available malacology 2023-11-07 09:43 (UTC)
bayestraits-mpi 4.1.1-1 0 0.00 A computer package for performing analyses of trait evolution among groups of species for which a phylogeny or sample of phylogenies is available malacology 2023-11-07 09:43 (UTC)
bbmap 39.06-3 1 0.00 A short read aligner and other bioinformatic tools malacology 2024-02-14 11:06 (UTC)
beagle-lib 4.0.1-1 5 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees malacology 2023-10-13 18:06 (UTC)
beagle-lib-all 4.0.1-1 0 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda and opencl) malacology 2024-01-17 06:02 (UTC)
beagle-lib-cuda 4.0.1-1 0 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees (with cuda) malacology 2024-01-17 06:05 (UTC)
beagle-lib-opencl 4.0.1-1 0 0.00 general purpose library for evaluating the likelihood of sequence evolution on trees (with opencl) malacology 2023-10-13 18:05 (UTC)
beast 1.10.4-0 1 0.00 Bayesian Evolutionary Analysis Sampling Trees. https://doi.org/10.1186/1471-2148-7-214 malacology 2023-05-07 11:21 (UTC)
beast2 2.7.6-1 1 0.00 Bayesian Evolutionary Analysis by Sampling Trees. https://doi.org/10.1371/journal.pcbi.1003537 malacology 2024-02-03 07:52 (UTC)
beastgen 1.10.4-0 1 0.00 Bayesian Evolutionary Analysis Sampling Trees. https://doi.org/10.1186/1471-2148-7-214 malacology 2023-05-07 11:21 (UTC)
bedops 2.4.41-2 1 0.00 Highly scalable genomic feature operations. https://doi.org/10.1093/bioinformatics/bts277 malacology 2023-03-03 07:06 (UTC)
bedtools 1:2.31.1-1 16 0.00 powerful toolset for genome arithmetic malacology 2024-01-16 20:38 (UTC)
biobambam 2.0.185_release_20221211202123-1 2 0.00 BAM file pre-processing utilities for bioinformatics. malacology 2022-12-12 00:13 (UTC)
bionj 1997-1 0 0.00 an improved version of the NJ algorithm based on a simple model of sequence data malacology 2022-06-01 14:03 (UTC)
btllib 1.7.0-1 0 0.00 Bioinformatics Technology Lab common code library https://doi.org/10.21105/joss.04720 malacology 2023-12-13 06:04 (UTC)
bucky 1.4.4-4 0 0.00 Bayesian Untangling of Concordance Knots https://doi.org/10.1093/bioinformatics/btq539 malacology 2022-08-28 14:32 (UTC)
clann 194f8aa-1 0 0.00 constructing consensus trees and supertrees from multiple source trees https://doi.org/10.1093/bioinformatics/bti020 malacology 2023-07-29 12:02 (UTC)
classic-delta 2.25g-0 0 0.00 An Open Source System for Processing Taxonomic Descriptions https://doi.org/10.2307/1219595 malacology 2022-11-29 15:54 (UTC)
coalgen 1.10.4-0 1 0.00 BEAST Coalescent Tree Simulator https://doi.org/10.1186/1471-2148-7-214 malacology 2023-05-07 11:21 (UTC)
consel 2011.05.12-0 0 0.00 Assessing the confidence of phylogenetic tree selection https://doi.org/10.1093/bioinformatics/17.12.1246 malacology 2023-02-10 18:37 (UTC)
cufflinks 2.2.2.20190706.162801-2 2 0.00 Transcriptome assembly and differential expression analysis for RNA-Seq. malacology 2023-06-01 21:03 (UTC)
dambe 7-1 0 0.00 New and improved tools for data analysis in molecular biology and evolution malacology 2021-05-11 15:48 (UTC)
dbasic 0.92.0-1 0 0.00 Modern implementation of the original Dartmouth BASIC compilers in the D programming language malacology 2023-10-20 09:41 (UTC)
dnarates 1.1.0-0 0 0.00 estimating site-specific nucleotide substitution rates by maximum likelihood https://doi.org/10.1093/nar/22.17.3485 malacology 2024-02-04 17:28 (UTC)
dnastar7activated 7.1.0-1 0 0.00 leader in the field of bioinformatics software, including SeqMan Editseq GeneQuest Megalign PrimerSelect Protean SeqBuilder malacology 2021-05-13 10:00 (UTC)
easycodeml 1.41-1 1 0.00 A visual tool for analysis of selection using CodeML. https://doi.org/10.1002/ece3.5015 malacology 2023-05-07 12:01 (UTC)
ekho 8.9.3-1 11 0.00 Multilingual text-to-speech (TTS) software for Cantonese, Mandarin, Toisanese, Zhaoan Hakka, Tibetan, Ngangien, Korean and English malacology 2023-06-25 09:48 (UTC)
ev-view 20160216.161212-2 0 0.00 A tool for visualization of evs results. malacology 2022-08-29 22:40 (UTC)
evs 20161229.215801-3 0 0.00 A tool for phylogenetic biogeography malacology 2022-08-29 22:40 (UTC)
exabayes 1.5.1-2 1 0.00 software package for Bayesian tree inference https://doi.org/10.1093/molbev/msu236 malacology 2022-08-30 12:02 (UTC)
examl 3.0.22-3 1 0.00 Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 malacology 2022-08-29 03:55 (UTC)
examl-mpi 3.0.22-3 1 0.00 Exascale Maximum Likelihood https://doi.org/10.1093/bioinformatics/btv184 malacology 2022-08-29 03:55 (UTC)
exonerate 2.4.0-2 3 0.00 A general purpose tool for biological sequence comparison malacology 2024-02-13 04:43 (UTC)
fastdnaml 1.2.2-0 0 0.00 A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood https://doi.org/10.1093/bioinformatics/10.1.41 malacology 2024-02-05 02:14 (UTC)
fastme 2.1.6.3-1 0 0.00 a comprehensive, accurate and fast distance-based phylogeny inference program https://doi.org/10.1093/molbev/msv150 malacology 2023-10-11 09:46 (UTC)
fastp 0.23.4-3 0 0.00 a tool designed to provide fast all-in-one preprocessing for FastQ files, developed in C++ with multithreading supported to afford high performance malacology 2023-07-09 10:10 (UTC)
fastqc 0.12.1-4 5 0.00 A quality control tool for high throughput sequence data. malacology 2023-06-23 18:01 (UTC)
fastuniq 1.1-1 0 0.00 ultrafast de novo tool for removal of duplicates in paired short DNA sequence reads in FASTQ format https://doi.org/10.1371/journal.pone.0052249 malacology 2024-02-14 18:01 (UTC)
fermi-lite 0.1.r13.g85f159e-2 1 0.01 Standalone C library for assembling Illumina short reads in small regions malacology 2023-03-22 05:31 (UTC)
figtree 1.4.4-10 0 0.00 Graphical viewer of phylogenetic trees malacology 2023-04-04 19:02 (UTC)
free-delta 3.3.0-1 0 0.00 An Open Source System for Processing Taxonomic Descriptions malacology 2023-12-30 16:16 (UTC)
freec 11.6-2 0 0.00 Copy number and genotype annotation in whole genome and whole exome sequencing data malacology 2022-04-17 18:01 (UTC)
garli 2.1-4 0 0.00 Phylogenetic analysis of molecular sequence data using the maximum-likelihood criterion malacology 2024-02-22 17:38 (UTC)
garlic 1.6-13 3 0.00 Molecular visualization program malacology 2023-04-04 19:03 (UTC)
garlic-doc 1.6-13 3 0.00 Documentation for garlic malacology 2023-04-04 19:03 (UTC)
gatk 4.5.0.0-1 1 0.00 Genome Analysis Toolkit https://doi.org/10.1101/gr.107524.110 malacology 2023-12-14 00:08 (UTC)

91013 packages found. Page 1127 of 1821.

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