91009 packages found. Page 1129 of 1821.

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Name Version Votes Popularity? Description Maintainer Last Updated
phylosuite 1.2.3-2 0 0.00 an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. https://doi.org/10.1111/1755-0998.13096 malacology 2023-04-04 19:09 (UTC)
pibuss 1.10.4-0 1 0.00 a BEAST/BEAGLE utility for sequence simulation, which provides an easy to use interface that allows flexible and extensible phylogenetic data fabrication. https://doi.org/10.1186/1471-2105-15-133 malacology 2023-05-07 11:21 (UTC)
picard-tools 3.1.1-1 8 0.00 set of tools for working with next generation sequencing data in the BAM format malacology 2023-11-15 00:03 (UTC)
pid_children-git r10.749d59c-1 0 0.00 A simple program outputs descendant process ids for each pid given on the command line malacology 2021-07-12 17:44 (UTC)
pleroma 2.6.2-1 0 0.00 A microblogging server software that can federate other servers that support ActivityPub malacology 2024-02-22 14:16 (UTC)
pleroma-git 2.5.50.2023.02.09-1 0 0.00 A microblogging server software that can federate other servers that support ActivityPub malacology 2023-02-11 14:41 (UTC)
plume 0.7.2-2 0 0.00 Federated blogging application malacology 2023-02-10 08:18 (UTC)
plume-postgres 0.7.2-1 0 0.00 Federated blogging application malacology 2022-05-25 00:54 (UTC)
plume-sqlite 0.7.2-1 0 0.00 Federated blogging application malacology 2022-05-25 01:00 (UTC)
popart 2019.07.15-6 0 0.00 Full-feature software for haplotype network reconstruction. https://doi.org/10.1111/2041-210X.12410 malacology 2023-07-02 18:33 (UTC)
preseq 3.2.0-3 0 0.00 A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth. malacology 2023-07-26 18:17 (UTC)
pvm 3.4.6-10 12 0.00 Parallel Virtual Machine malacology 2022-10-20 12:01 (UTC)
python-dendropy 4.6.1-1 0 0.00 A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. malacology 2023-06-09 06:02 (UTC)
python-ete3 3.1.3-1 1 0.00 A Python Environment for (phylogenetic) Tree Exploration malacology 2023-05-02 12:02 (UTC)
r-ecoindr 2.0-2 0 0.00 Ecological Indicators malacology 2024-03-06 00:05 (UTC)
r-fd 1.0.12.3-2 0 0.00 Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology malacology 2024-03-06 00:05 (UTC)
r-genepop 1.2.2-1 0 0.00 Population Genetic Data Analysis Using Genepop malacology 2024-03-05 00:01 (UTC)
r-geoscale 2.0.1-2 0 0.00 Geological Time Scale Plotting malacology 2024-02-23 00:01 (UTC)
r-protoclust 1.6.4-2 0 0.00 Hierarchical Clustering with Prototypes malacology 2024-02-23 00:01 (UTC)
r-quartet 1.2.6-2 0 0.00 Comparison of Phylogenetic Trees Using Quartet and Split Measures malacology 2024-02-23 00:06 (UTC)
r-rarity 1.3.8-2 0 0.00 Calculation of Rarity Indices for Species and Assemblages of Species malacology 2024-03-06 00:01 (UTC)
r-rcpphungarian 0.3-2 0 0.00 Solves Minimum Cost Bipartite Matching Problems malacology 2024-02-23 00:02 (UTC)
r-rogue 2.1.6-2 0 0.00 Identify Rogue Taxa in Sets of Phylogenetic Trees malacology 2024-02-23 00:05 (UTC)
r-strap 1.6.0-2 0 0.00 Stratigraphic Tree Analysis for Palaeontology malacology 2024-02-23 00:03 (UTC)
r-tbrdist 1.0.2-2 0 0.00 Rearrangement Distances Between Unrooted Phylogenetic Trees malacology 2024-02-23 00:05 (UTC)
r-ternary 2.3.1-2 0 0.00 Create Ternary and Holdridge Plots malacology 2024-02-23 00:04 (UTC)
r-treedist 2.7.0-2 0 0.00 Calculate and Map Distances Between Phylogenetic Trees malacology 2024-02-23 00:03 (UTC)
rasp 4.2-1 0 0.00 Reconstruct Ancestral State in Phylogenies is a tool for inferring ancestral state malacology 2021-05-10 08:12 (UTC)
raxml-light 1.0.9-1 0 0.00 A tool for computing terabyte phylogenies https://doi.org/10.1093/bioinformatics/bts309 malacology 2022-08-29 01:53 (UTC)
raxml-ng 1.2.1-1 1 0.00 A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 malacology 2023-12-22 18:11 (UTC)
raxml-ng-mpi 1.2.1-1 0 0.00 A phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. https://doi.org/10.1093/bioinformatics/btz305 malacology 2023-12-22 18:14 (UTC)
raxmlgui 2.0.10-2 1 0.00 A new user-friendly program integrating RAxML-NG and ModelTest-NG for cutting-edge phylogenetic analysis. https://doi.org/10.1111/2041-210X.13512 malacology 2023-12-05 00:03 (UTC)
revbayes 1.2.2-1 1 0.00 Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 malacology 2023-06-10 05:44 (UTC)
revbayes-mpi 1.2.2-1 1 0.00 Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language https://doi.org/10.1093/sysbio/syw021 malacology 2023-06-10 05:23 (UTC)
rockpix-ap6255 1.0-1 0 0.00 WiFi & BT Firmware patch for ROCK PI X malacology 2024-03-17 18:19 (UTC)
seaview 5.0.5-8 11 0.00 GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 malacology 2022-09-03 01:59 (UTC)
seqan3 3.3.0-1 0 0.00 The modern C++ library for sequence analysis https://doi.org/10.1016/j.jbiotec.2017.07.017 malacology 2023-10-06 15:14 (UTC)
seqcombgo 0.0.1-1 0 0.00 Sequence Combination tool written in Golang malacology 2022-01-18 17:47 (UTC)
seqcombgo-bin 0.0.1-1 0 0.00 Sequence Combination tool written in Golang malacology 2022-01-18 17:46 (UTC)
seqcombgo-git r61.7abdfcb-1 0 0.00 Sequence Combination tool written in Golang malacology 2022-01-18 17:43 (UTC)
seqdistk 1.0-2 0 0.00 tools to calculate the distance among sequence malacology 2023-04-04 19:09 (UTC)
seqlib 1.2.0-12 0 0.00 C++ htslib/bwa-mem/fermi interface for interrogating sequence data malacology 2024-01-23 00:11 (UTC)
sequencematrix 1.9-6 1 0.00 Taxonomy-aware DNA sequence processing toolkit malacology 2022-12-04 01:53 (UTC)
sfa-spa 0.2.1-0 0 0.00 A short peptide assembler for metagenomic data https://doi.org/10.1093/nar/gkt118 malacology 2023-03-04 19:13 (UTC)
slf-wt 2014.03.10-0 0 0.00 A prototype program implementing character state reconstructions under non-lineal functions of the state changes (Pee-Wee with SeLF-WeighTed) https://doi.org/10.1006/clad.1997.0043 malacology 2023-07-29 17:57 (UTC)
smartdenovo 2021.02.24-1 0 0.00 About Ultra-fast de novo assembler using long noisy reads malacology 2023-02-09 11:45 (UTC)
soapnuke 2.1.8-1 0 0.00 A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files http://dx.doi.org/10.5524/100361 malacology 2023-10-13 19:08 (UTC)
spa 2014.03.10-0 0 0.00 Sankoff Parsimony Analysis https://doi.org/10.1006/clad.1998.0068 malacology 2023-07-29 17:57 (UTC)
speciesidentifier 1.9-6 1 0.00 Taxonomy-aware DNA sequence processing toolkit malacology 2022-12-04 01:53 (UTC)
spread 1.0.7-6 0 0.00 a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion. https://doi.org/10.1093/bioinformatics/btr481 malacology 2023-05-06 15:46 (UTC)

91009 packages found. Page 1129 of 1821.

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