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Package Details: abyss 2.3.5-1
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| Git Clone URL: | https://aur.archlinux.org/abyss.git (read-only, click to copy) |
|---|---|
| Package Base: | abyss |
| Description: | Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler |
| Upstream URL: | https://github.com/bcgsc/abyss |
| Keywords: | assembler bioinformatics bloom-filter c-plus-plus genome mpi openmp scaffold science |
| Licenses: | GPL3 |
| Submitter: | Synchronicity |
| Maintainer: | PolpOnline |
| Last Packager: | PolpOnline |
| Votes: | 1 |
| Popularity: | 0.000000 |
| First Submitted: | 2012-05-27 16:26 (UTC) |
| Last Updated: | 2022-05-16 15:59 (UTC) |
Dependencies (8)
- make (make-git)
- openmpi (openmpi-git, openmpi-gcc10)
- sqlite (sqlite-replication, sqlite-minimal-git, sqlite-fts3-parenthesis, sqlite-fossil)
- boost (boost-git) (make)
- sparsehash (make)
- pigz (pigz-git) (optional) – for parallel gzip
- samtools (samtools-git) (optional) – to read BAM files
- zsh (zsh-git, zsh-athame-git, zsh-fix-winchanged-git, zsh-minimal-git) (optional) – to report time and memory usage