Package Details: abyss 2.3.7-2

Git Clone URL: https://aur.archlinux.org/abyss.git (read-only, click to copy)
Package Base: abyss
Description: Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
Upstream URL: https://github.com/bcgsc/abyss
Keywords: assembler bioinformatics bloom-filter c-plus-plus genome mpi openmp scaffold science
Licenses: GPL3
Submitter: Synchronicity
Maintainer: malacology (BioArchLinuxBot)
Last Packager: BioArchLinuxBot
Votes: 1
Popularity: 0.000000
First Submitted: 2012-05-27 16:26 (UTC)
Last Updated: 2023-06-02 00:37 (UTC)

Dependencies (9)

Required by (0)

Sources (1)

Latest Comments

PolpOnline commented on 2023-05-10 21:16 (UTC) (edited on 2023-05-10 21:16 (UTC) by PolpOnline)

@malacology If you want to, I suggest you to maintain this package yourself. I don't really care for its existence, so I disowned it

malacology commented on 2023-05-09 16:54 (UTC)

The conda build.sh suggests

./configure \
    --prefix="$PREFIX" \
    --with-boost="$PREFIX" \
    --with-mpi="$PREFIX" \
    --with-sparsehash="$PREFIX" \
    --without-sqlite

Please refer https://github.com/bioconda/bioconda-recipes/blob/master/recipes/abyss/build.sh and then we can confirm if it's eror from btllib

malacology commented on 2023-05-09 16:35 (UTC)

mistake and untested PKGBUILD.

btllib, boost-libs lack in depends

make should be moved to makedepends

samtools should be removed from optdepends as btllib depends on it

Even though it won't pass compile, I guess it would be btllib issue, I need time to process it.