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Package Details: ambertools 21-2
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| Git Clone URL: | https://aur.archlinux.org/ambertools.git (read-only, click to copy) |
|---|---|
| Package Base: | ambertools |
| Description: | Biomolecular simulation package (tools only) |
| Upstream URL: | http://ambermd.org/ |
| Licenses: | GPL, LGPL |
| Submitter: | dviktor |
| Maintainer: | None |
| Last Packager: | dviktor |
| Votes: | 2 |
| Popularity: | 0.000000 |
| First Submitted: | 2019-05-05 18:23 (UTC) |
| Last Updated: | 2021-06-21 12:30 (UTC) |
Dependencies (32)
- blas (openblas-lapack-git, openblas-git, blas-tmg, openblas-cblas-git, blas-git, armpl, openblas-lapack, blis-git, blis, atlas-lapack, blis-cblas-openmp, blis-cblas, openblas-lapack-static, openblas)
- boost (boost-git)
- bzip2 (bzip2-git, bzip2-rustify-git, bzip2-with-lbzip2-symlinks)
- gcc10-fortran
- lapack (openblas-lapack-git, lapack-tmg, lapack-git, armpl, openblas-lapack, atlas-lapack, openblas-lapack-static)
- libx11 (libx11-git)
- libxext (libxext-git)
- perl (perl-git)
- perl-chemistry-mol
- python (python38, python37, python3.7, nogil-python, python39, python36, python311, python32)
- python-matplotlib (python-matplotlib-git)
- python-numpy (python-numpy-git, python-numpy-openblas, python-numpy-mkl-bin, python-numpy-mkl)
- python-scipy (python-scipy-mkl-bin, python-scipy-git, python-scipy-mkl)
- python-setuptools
- tk (tk85)
- zlib (zlib-static, zlib-git, zlib-ng, zlib-ng-compat-git)
- bison (byacc-bison, bison-git) (make)
- cmake (cmake-git) (make)
- cuda (cuda-11.0, cuda11.1) (make)
- flex (flex-git) (make)
- Show 12 more dependencies...
Latest Comments
vedranmiletic commented on 2022-01-31 17:34 (UTC)
I get a different build failure:
Any ideas?
Maxwell23 commented on 2021-08-24 08:59 (UTC)
@dviktor Relevant part of log with error when compiling in single thread (with makepkg, building by hand):
:(
dviktor commented on 2021-08-23 19:23 (UTC)
@Maxwell23 can you try to build by hand, with
makepkg, without using AUR helpers?Maxwell23 commented on 2021-08-22 21:54 (UTC) (edited on 2021-08-22 21:55 (UTC) by Maxwell23)
Relevant part of log with error when compiling in single thread (sorry for russian part):
dviktor commented on 2021-08-21 12:20 (UTC)
that error log isn't full. try to compile in single thread (MAKEFLAGS=j1) and post relevant part of log with error, please
Maxwell23 commented on 2021-08-19 21:35 (UTC) (edited on 2021-08-19 21:38 (UTC) by Maxwell23)
Please help me. I get an error when trying to emerge AmberTools:
[ 35%] Built target cpptraj_common_objmake: *** [Makefile:156: all] Error 2What should I do?
dviktor commented on 2020-11-15 15:48 (UTC)
@asakurahao I have similar warnings but they shouldn't block
xleapfrom running:To avoid these messages you can try to install one of the Xorg fonts
asakurahao commented on 2020-11-15 15:47 (UTC)
@dviktor Thanks, it works now!
dviktor commented on 2020-11-15 10:45 (UTC)
@asakurahao it seems like AMBER developers haven't published support patch. I've added one so re-download package and try again
asakurahao commented on 2020-11-14 23:11 (UTC)
@dviktor, It is working now, Thanks.
Now, I'm having problems with version of CUDA. "CUDA version 11.1 detected Error: Unsupported CUDA version. AMBER requires CUDA version >= 7.5 and <= 10.2."
How can I disable it or correct this problem?
dviktor commented on 2020-11-14 19:05 (UTC)
@asakurahao Yes, AMBER developers require that you download sources from their website. Then you should place them in the same directory where your downloaded
PKGBUILDresides. After that just runmakepkgasakurahao commented on 2020-11-14 19:03 (UTC)
Dear,
When I try to install, the message is shown: Building ambertools... ==> Making package: ambertools 20-5 (Sat 14 Nov 2020 03:55:49 PM -03) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Retrieving sources... ==> ERROR: AmberTools20.tar.bz2 was not found in the build directory and is not a URL. Failed to build ambertools
Looking in the source files, there is a "local://AmberTools20.tar.bz2". Should I download the software? If yes, where should I put it?
dviktor commented on 2019-09-19 12:53 (UTC)
@Gusten should be fixed now
Gusten commented on 2019-09-19 11:49 (UTC)
It appears that the md5sums for amber.sh and 19 need to be updated.