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Package Details: artemis 18.1.0-1
| Git Clone URL: | https://aur.archlinux.org/artemis.git (read-only, click to copy) |
|---|---|
| Package Base: | artemis |
| Description: | A genome viewer and annotation tool that visualizes biological sequence features |
| Upstream URL: | https://www.sanger.ac.uk/science/tools/artemis |
| Keywords: | bioinformatics bioinformatics-tools genomics genomics-browser sanger |
| Licenses: | |
| Submitter: | clintval |
| Maintainer: | None |
| Last Packager: | TheGoliath |
| Votes: | 2 |
| Popularity: | 0.000019 |
| First Submitted: | 2017-11-01 21:38 |
| Last Updated: | 2020-01-19 18:12 |
Dependencies (1)
- java-runtime>=1.6 (jdk5, jre7-openjdk-infinality, java-8-openjdk-shenandoah, jre8-openjdk-infinality, java-gcj-compat, jdk9, jre9, jdk-devel, jre10, jdk6, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, jdk8-openjdk-dcevm, server-jre, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jre8-openjdk-jetbrains, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, jre14, jdk8-jetbrains, zulu-14-bin, zulu-13-bin, jdk-bcl, jre-bcl, amazon-corretto-15, jdk11-openjdk-dcevm-conflicts-fixed, zulu-embedded-jdk8, sapmachine-jdk-bin, jdk15-adoptopenjdk, jdk11-msopenjdk-bin, liberica-jre-8-full-bin, jdk8-arm, jre11-jetbrains-imfix, amazon-corretto-16, jdk8-graalvm-bin, jdk16-graalvm-bin, jdk-openj9-bin, jre8-adoptopenjdk, jre-openj9, jre8, jdk8, jre11, jre8-openjdk-shenandoah, zulu-16-bin, jdk-arm, jdk7-j9-bin, jdk7r1-j9-bin, jdk11-openj9-bin, jdk11-graalvm-ee-bin, jdk17-graalvm-bin, jdk8-openj9-bin, jdk8-j9-bin, jdk11-j9-bin, jdk-jetbrains, zulu-embedded-jdk, jdk-adoptopenjdk, jdk16-adoptopenjdk, java-openjdk-loom-ea-bin, jdk11-graalvm-bin, java-openjdk-bin, jre, jre-jetbrains, java-openjdk-ea-bin, zulu-15-bin, liberica-jdk-8-full-bin, liberica-jdk-11-bin, liberica-jdk-11-full-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, liberica-jre-11-full-bin, zulu-embedded-jdk11, liberica-jdk-full-bin, amazon-corretto-17, amazon-corretto-8, amazon-corretto-11, jdk11-adoptopenjdk, zulu-jre-fx-bin, zulu-17-bin, zulu-11-bin, zulu-8-bin, jre-openjdk, jre11-openjdk, jre7-openjdk, jre8-openjdk)
Latest Comments
AsGreyWolf commented on 2020-06-13 15:52
Need to set APPLICATION_HOME to /opt/artemis (in the launcher scripts /usr/bin/art / .... /)
saulpierotti commented on 2020-01-25 09:08
I get the same error when I try to run art. When I install the tar direcrtly from the source it works instead. I am using java 13.
GG-31 commented on 2019-09-06 10:37
Hi ! Like Vrob, i have the same error message when I want to run the script act.jar
Any ideas for solve this ?
Vrob commented on 2018-12-02 12:44
I have two issues with this package, one of which I was able to resolve:
It seems like aur/log4j is a dependency, as I was getting java errors about org/apache/log4j/AppenderSkeleton not being found. They disappeared after installing the package.
Now, when I try to run either art or act I get the following error message.
$ art Starting Artemis with arguments: -mx2g -ms100m -noverify -Djdbc.drivers=org.postgresql.Driver -Dartemis.environment=UNIX
Error: Could not find or load main class uk.ac.sanger.artemis.components.ArtemisMain Caused by: java.lang.ClassNotFoundException: uk.ac.sanger.artemis.components.ArtemisMain
Any ideas what I'm missing here?
maheha commented on 2018-02-27 09:25
@clintcal Thanks!
clintval commented on 2018-02-26 18:31
Hi @maheha, looks like they changed the upstream URL. I just fixed.
maheha commented on 2018-02-26 12:13
Hi
I get this error while making package: curl: (78) RETR response: 550 ==> ERROR: Failure while downloading ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/v16.0.18.tar.gz Aborting...
thanks for the package.