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Package Details: bamtools 2.5.3-1

Package Actions

Git Clone URL:	https://aur.archlinux.org/bamtools.git (read-only, click to copy)
Package Base:	bamtools
Description:	C++ API & command-line toolkit for working with BAM data
Upstream URL:	https://github.com/pezmaster31/bamtools
Licenses:	custom
Submitter:	stratust
Maintainer:	mys_721tx
Last Packager:	mys_721tx
Votes:	3
Popularity:	0.000000
First Submitted:	2012-01-16 06:11 (UTC)
Last Updated:	2025-05-29 11:31 (UTC)

Dependencies (3)

gcc-libs (gcc-libs-git^AUR, gccrs-libs-git^AUR, gcc-libs-snapshot^AUR)
zlib (zlib-git^AUR, zlib-ng-compat-git^AUR, zlib-ng-compat)
cmake (cmake3^AUR, cmake-git^AUR) (make)

Required by (0)

Sources (1)

bamtools-2.5.3.tar.gz

Latest Comments

wookietreiber commented on 2017-06-30 11:05 (UTC)

@confusedfla: this package installs /usr/include/bamtools/api/BamReader.h - the problem is, that you need to #include <bamtools/api/BamReader.h> i.e. whith angle brackets, not double quotes. Double quotes should be used only for headers *within* your project, see https://stackoverflow.com/questions/21593/what-is-the-difference-between-include-filename-and-include-filename

confusedfla commented on 2017-06-30 10:04 (UTC)

How about patching the paths, s.t. it can nicely included by default with e.g. "bamtools/api/Reader.h" and no include paths need to be provided manually? It would be as simple as adding this patching to the prepare(): sed -i "s/api\//bamtools\/api\//g" $(find $scrdir -name "*.h" -o -name "*.h") mkdir -p src/$pkgname [ ! -e src/$pkgname/api ] && ln -s $(realpath src/api) src/$pkgname/api