Package Details: bcftools 1.23.1-1

Git Clone URL: https://aur.archlinux.org/bcftools.git (read-only, click to copy)
Package Base: bcftools
Description: A program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF
Upstream URL: https://samtools.github.io/bcftools
Licenses: GPL-3.0-only
Submitter: sbarbi
Maintainer: meanjollies
Last Packager: meanjollies
Votes: 8
Popularity: 0.000000
First Submitted: 2012-10-02 15:52 (UTC)
Last Updated: 2026-03-19 03:18 (UTC)

Latest Comments

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balwierz commented on 2026-04-13 16:02 (UTC)

Sorry, my bad. I had an old installation of bcftools in /usr/local before UMIs were introduced. I deleted the comment.

meanjollies commented on 2026-04-12 21:14 (UTC)

@balwierz I cannot reproduce that, even in a clean build environment. Make sure your version of htslib matches the version of bcftools you are trying to install. In this case, it should also be 1.23.1.

wookietreiber commented on 2016-03-05 10:54 (UTC)

Turns out there was already a fix. Updated to include it.

lzlarryli commented on 2016-03-03 23:08 (UTC) (edited on 2016-03-03 23:12 (UTC) by lzlarryli)

Hi, I had a build error: peakfit.c: In function ‘peakfit_run’: peakfit.c:553:41: error: ‘gsl_multifit_fdfsolver {aka struct <anonymous>}’ has no member named ‘J’ gsl_multifit_gradient(solver->J, solver->f, grad); ^ Makefile:95: recipe for target 'peakfit.o' failed make: *** [peakfit.o] Error 1 It seems some gsl related problem. However, I downloaded bcftools from the official site and that compiled corrected without any problem.

wookietreiber commented on 2015-02-06 10:54 (UTC)

Now the plugins are also included at /usr/lib/bcftools. This directory is set in /etc/profile.d/bcftools.sh via BCFTOOLS_PLUGINS environment variable.

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