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Package Details: bcftools 1.11-1
| Git Clone URL: | https://aur.archlinux.org/bcftools.git (read-only, click to copy) |
|---|---|
| Package Base: | bcftools |
| Description: | A program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF |
| Upstream URL: | https://samtools.github.io/bcftools |
| Licenses: | |
| Submitter: | sbarbi |
| Maintainer: | meanjollies |
| Last Packager: | meanjollies |
| Votes: | 8 |
| Popularity: | 0.000218 |
| First Submitted: | 2012-10-02 15:52 |
| Last Updated: | 2020-09-22 15:57 |
Latest Comments
wookietreiber commented on 2016-03-05 10:54
Turns out there was already a fix. Updated to include it.
lzlarryli commented on 2016-03-03 23:08
Hi, I had a build error:
peakfit.c: In function ‘peakfit_run’:
peakfit.c:553:41: error: ‘gsl_multifit_fdfsolver {aka struct <anonymous>}’ has no member named ‘J’
gsl_multifit_gradient(solver->J, solver->f, grad);
^
Makefile:95: recipe for target 'peakfit.o' failed
make: *** [peakfit.o] Error 1
It seems some gsl related problem.
However, I downloaded bcftools from the official site and that compiled corrected without any problem.
wookietreiber commented on 2015-02-06 10:54
Now the plugins are also included at /usr/lib/bcftools.
This directory is set in /etc/profile.d/bcftools.sh via BCFTOOLS_PLUGINS environment variable.
wookietreiber commented on 2015-02-05 11:17
Now the plugins are also included at /usr/share/bcftools/plugins.
This directory is set in /etc/profile.d/bcftools.sh via BCFTOOLS_PLUGINS environment variable.
wookietreiber commented on 2014-08-18 20:27
I also had to perform quite a bit of Makefile patching, let me know if I can help.
wookietreiber commented on 2014-08-18 20:26
1.0 has been released. Since they outsourced htslib from samtools as well I just added htslib to AUR. I think you should use that.