Package Details: bcftools 1.5-1

Git Clone URL: https://aur.archlinux.org/bcftools.git (read-only)
Package Base: bcftools
Description: Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
Upstream URL: http://samtools.github.io/bcftools/
Licenses: GPL
Submitter: sbarbi
Maintainer: wookietreiber
Last Packager: wookietreiber
Votes: 6
Popularity: 0.955651
First Submitted: 2012-10-02 15:52
Last Updated: 2017-06-28 15:28

Dependencies (3)

Required by (0)

Sources (1)

Latest Comments

wookietreiber commented on 2016-03-05 10:54

Turns out there was already a fix. Updated to include it.

lzlarryli commented on 2016-03-03 23:08

Hi, I had a build error:

peakfit.c: In function ‘peakfit_run’:
peakfit.c:553:41: error: ‘gsl_multifit_fdfsolver {aka struct <anonymous>}’ has no member named ‘J’
gsl_multifit_gradient(solver->J, solver->f, grad);
^
Makefile:95: recipe for target 'peakfit.o' failed
make: *** [peakfit.o] Error 1

It seems some gsl related problem.

However, I downloaded bcftools from the official site and that compiled corrected without any problem.

wookietreiber commented on 2015-02-06 10:54

Now the plugins are also included at /usr/lib/bcftools.

This directory is set in /etc/profile.d/bcftools.sh via BCFTOOLS_PLUGINS environment variable.

wookietreiber commented on 2015-02-05 11:17

Now the plugins are also included at /usr/share/bcftools/plugins.

This directory is set in /etc/profile.d/bcftools.sh via BCFTOOLS_PLUGINS environment variable.

wookietreiber commented on 2014-08-18 20:27

I also had to perform quite a bit of Makefile patching, let me know if I can help.

wookietreiber commented on 2014-08-18 20:26

1.0 has been released. Since they outsourced htslib from samtools as well I just added htslib to AUR. I think you should use that.