Package Details: bedtools 1:2.31.1-1

Git Clone URL: https://aur.archlinux.org/bedtools.git (read-only, click to copy)
Package Base: bedtools
Description: powerful toolset for genome arithmetic
Upstream URL: https://github.com/arq5x/bedtools2
Keywords: genomics science sequencing
Licenses: GPL2
Submitter: stratust
Maintainer: malacology (BioArchLinuxBot)
Last Packager: BioArchLinuxBot
Votes: 16
Popularity: 0.000000
First Submitted: 2012-01-15 21:50 (UTC)
Last Updated: 2024-01-16 20:38 (UTC)

Latest Comments

wookietreiber commented on 2023-11-01 05:34 (UTC)

You may need to explicitly set -std=c++11 for it to compile. The Makefile is a bit messed up.

balwierz commented on 2023-10-28 17:52 (UTC)

Please do not flag out-of-date. The current version 2.31.0 does not compile with current gcc. Waiting for a fix upstream.

malacology commented on 2023-06-11 18:04 (UTC)

If you are delighted, you can join us to maintain bedtools which would help you update pkg as soon as it update

see here https://github.com/BioArchLinux/Packages/blob/master/BioArchLinux/bedtools/PKGBUILD

luscinius commented on 2021-02-11 01:32 (UTC)

As greyltc said, python should be added to makedepends. Without it the package fails to build in a clean chroot using aurutils.

greyltc commented on 2015-01-15 23:38 (UTC)

python should be added to the build time dependencies: ... - Building main bedtools binary. done. - Creating executables for old CLI. /bin/bash: python: command not found make: *** [all] Error 127 Makefile:99: recipe for target 'all' failed ==> ERROR: A failure occurred in build(). Aborting... ==> ERROR: Makepkg was unable to build bedtools. ...

wookietreiber commented on 2015-01-06 09:19 (UTC)

Update for 2.22.1 available at https://github.com/wookietreiber/PKGBUILDs/blob/master/bedtools/PKGBUILD

wookietreiber commented on 2014-11-13 10:16 (UTC)

2.22.0 is out, see [1] for an up to date PKGBUILD which does not contain any namcap errors / warnings https://github.com/wookietreiber/PKGBUILDs/blob/master/bedtools/PKGBUILD

balwierz commented on 2014-06-24 13:48 (UTC)

2.20.1 is out: https://github.com/arq5x/bedtools2/releases

allencch commented on 2013-12-16 05:49 (UTC)

2.18.0 released on https://github.com/arq5x/bedtools2/releases