Package Details: bioperl-live-git 20161203-1

Git Clone URL: https://aur.archlinux.org/bioperl-live-git.git (read-only)
Package Base: bioperl-live-git
Description: Perl modules for bioinformatics applications.
Upstream URL: http://www.bioperl.org
Licenses: GPL, PerlArtistic
Submitter: td123
Maintainer: Ordoban
Last Packager: Ordoban
Votes: 1
Popularity: 0.000000
First Submitted: 2010-05-23 20:30
Last Updated: 2017-01-04 08:04

Dependencies (4)

Required by (1)

Sources (0)

Latest Comments

jnbek commented on 2016-03-19 22:22

I've tried to get this package working but it's just not happening, I'm going to release this to the wild and hope for the best.

m.gruenstaeudl commented on 2015-08-11 07:52

Another error occurs when yaourt attempts to build the bioperl package:

==> Building and installing package
==> Making package: bioperl-live-git 20100604-1 (Tue Aug 11 09:48:09 CEST 2015)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
==> Extracting sources...
==> Entering fakeroot environment...
==> Starting package()...
==> Getting sources...
Cloning into 'bioperl-live'...
remote: Counting objects: 104740, done.
remote: Total 104740 (delta 0), reused 0 (delta 0), pack-reused 104740
Receiving objects: 100% (104740/104740), 143.09 MiB | 10.22 MiB/s, done.
Resolving deltas: 100% (78899/78899), done.
Checking connectivity... done.
==> GIT checkout done or server timeout
==> Starting make...
Can't locate Bio/Root/Build.pm in @INC (you may need to install the Bio::Root::Build module) (@INC contains: . /usr/lib/perl5/site_perl /usr/share/perl5/site_perl /usr/lib/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib/perl5/core_perl /usr/share/perl5/core_perl) at Build.PL line 14.
BEGIN failed--compilation aborted at Build.PL line 14.
==> ERROR: A failure occurred in package().
Aborting...
==> ERROR: Makepkg was unable to build bioperl-live-git.
==> Restart building bioperl-live-git ? [y/N]
==> -----------------------------------------
==>

m.gruenstaeudl commented on 2015-08-11 07:50

Another errors occurs upon downloading the source code from Github:

==> Building and installing package
==> Making package: bioperl-live-git 20100604-1 (Tue Aug 11 09:48:09 CEST 2015)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
==> Extracting sources...
==> Entering fakeroot environment...
==> Starting package()...
==> Getting sources...
Cloning into 'bioperl-live'...
remote: Counting objects: 104740, done.
remote: Total 104740 (delta 0), reused 0 (delta 0), pack-reused 104740
Receiving objects: 100% (104740/104740), 143.09 MiB | 10.22 MiB/s, done.
Resolving deltas: 100% (78899/78899), done.
Checking connectivity... done.
==> GIT checkout done or server timeout
==> Starting make...
Can't locate Bio/Root/Build.pm in @INC (you may need to install the Bio::Root::Build module) (@INC contains: . /usr/lib/perl5/site_perl /usr/share/perl5/site_perl /usr/lib/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib/perl5/core_perl /usr/share/perl5/core_perl) at Build.PL line 14.
BEGIN failed--compilation aborted at Build.PL line 14.
==> ERROR: A failure occurred in package().
Aborting...
==> ERROR: Makepkg was unable to build bioperl-live-git.
==> Restart building bioperl-live-git ? [y/N]
==> -----------------------------------------
==>

m.gruenstaeudl commented on 2015-08-11 07:48

The below error can be resolved by editing the PKGBUILD and replacing "build()" with "package()".

m.gruenstaeudl commented on 2015-08-10 15:21

Installation via yaourt fails with the following error message:

thatsme ~ $ yaourt -S bioperl-live-git --noconfirm

==> Downloading bioperl-live-git PKGBUILD from AUR...
x .SRCINFO
x PKGBUILD
bioperl-live-git 20100604-1 (2015-06-16 19:56)
( Unsupported package: Potentially dangerous ! )
==> bioperl-live-git dependencies:
- perl (already installed)
- perl-io-string (already installed)
- perl-data-stag (already installed)
- git (already installed)


==> Continue building bioperl-live-git ? [Y/n]
==> ------------------------------------------
==>
==> Building and installing package
==> ERROR: Missing package() function in /tmp/yaourt-tmp-thatsme/aur-bioperl-live-git/./PKGBUILD
==> ERROR: Makepkg was unable to build bioperl-live-git.
==> Restart building bioperl-live-git ? [y/N]
==> -----------------------------------------
==>