@kbipinkumar I have reported it to the upstream. Since 2.17.0 should come out in the next couple weeks, let's see if they can fix that.
2.17.0 compiles without problem.
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Package Details: blast+ 2.17.0-3
Package Actions
| Git Clone URL: | https://aur.archlinux.org/blast+.git (read-only, click to copy) |
|---|---|
| Package Base: | blast+ |
| Description: | BLAST tool suite from NCBI (blastn, blastp, blastx, psiblast, etc) |
| Upstream URL: | http://blast.ncbi.nlm.nih.gov/ |
| Licenses: | NCBI-PD |
| Conflicts: | blast, blast+-bin, ncbi-blast, proj |
| Provides: | blast |
| Replaces: | ncbi-blast |
| Submitter: | wookietreiber |
| Maintainer: | mys_721tx |
| Last Packager: | mys_721tx |
| Votes: | 7 |
| Popularity: | 0.000000 |
| First Submitted: | 2015-07-07 11:11 (UTC) |
| Last Updated: | 2025-08-16 19:48 (UTC) |
Dependencies (16)
- bash (bash-devel-gitAUR, bash-gitAUR)
- bzip2 (bzip2-gitAUR)
- gcc-libs (gcc-libs-gitAUR, gccrs-libs-gitAUR, gcc-libs-snapshotAUR)
- glibc (glibc-gitAUR, glibc-eacAUR)
- libnghttp2 (libnghttp2-gitAUR)
- libuv (libuv-gitAUR)
- lmdb (lumosqlAUR, lmdb-gitAUR)
- lzo
- pcre2 (pcre2-gitAUR)
- perl (perl-gitAUR)
- python (python37AUR)
- sqlite (sqlite-fossilAUR)
- zlib (zlib-gitAUR, zlib-ng-compat-gitAUR, zlib-ng-compat)
- zstd (zstd-gitAUR, zstd-staticAUR)
- cpio (cpio-gitAUR) (make)
- gcc (gcc-gitAUR, gccrs-gitAUR, gcc-snapshotAUR) (make)
Required by (10)
- amrfinderplus
- bio-tbtools (optional)
- diamond
- getorganelle
- hybpiper
- kraken2
- mitos
- ugene-bin (optional)
- ugene-git (optional)
- unicycler (optional)
Sources (1)
mys_721tx commented on 2025-07-18 21:14 (UTC) (edited on 2025-07-21 19:15 (UTC) by mys_721tx)
kbipinkumar commented on 2025-06-26 07:22 (UTC)
the package fails to build with following errors. Complete log can be found here
/usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=17397ac3-ea12-44b4-ae06-1e4454429d5d /build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o
/usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=17397ac3-ea12-44b4-ae06-1e4454429d5d /build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o
/usr/bin/g++ -std=gnu++17 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/build/blast+/src/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=17397ac3-ea12-44b4-ae06-1e4454429d5d /build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o
make[4]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
FAILED: src/serial/Makefile.serial.lib
make[4]: Entering directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
/bin/rm -f libxser.so libxser.so .xser.dep .libxser.so.stamp
/bin/rm -f /build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxser.so /build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xser.dep
make[4]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
make[3]: *** [/build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l:336: all.nonusr] Error 2
make[3]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
make[2]: *** [/build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l:288: all_l.real] Error 2
make[2]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/serial'
make[1]: *** [/build/blast+/src/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
make[1]: Leaving directory '/build/blast+/src/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build'
make: *** [Makefile:24: all] Error 2
?[1m?[31m==> ERROR:?(B?[m?[1m A failure occurred in build().?(B?[m
?[1m Aborting...?(B?[m
mys_721tx commented on 2023-06-19 06:27 (UTC) (edited on 2023-08-24 07:11 (UTC) by mys_721tx)
blast+ 2.14.0 cannot be compiled under GCC 13 due to breaking changes. Upstream is notified. Upstream fixed the problem in 2.14.1.
mys_721tx commented on 2022-11-25 18:46 (UTC)
@buggs Sorry for the late reply. -j should be handled by MAKEFLAGS, which is in /etc/makepkg.conf.
buggs commented on 2022-10-28 16:48 (UTC)
Could you add -j to make so it uses all cores to build? make -j
stick commented on 2022-02-03 22:06 (UTC)
Welcome to the new maintainer @mys_721tx!
mys_721tx commented on 2022-02-03 22:04 (UTC)
I am happy to take over the maintenance if you wish.
stick commented on 2022-02-03 21:56 (UTC) (edited on 2022-02-03 21:56 (UTC) by stick)
@mys_721tx bumped (and conflicts updated), thanks!
mys_721tx commented on 2022-02-02 09:44 (UTC)
Bump for 2.12.0. The sha256sum is fda3c9c9d488cad6c1880a98a236d842bcf3610e3e702af61f7a48cf0a714b88.
Also blast+ is in conflict with proj due to libproj.so
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