Package Details: bowtie 1.1.2-1

Git Clone URL: https://aur.archlinux.org/bowtie.git (read-only)
Package Base: bowtie
Description: Bowtie is an alignment tool for short nucleotide sequences against long templates
Upstream URL: http://bowtie-bio.sf.net
Keywords: science
Licenses: PerlArtistic
Submitter: Athemis
Maintainer: Athemis
Last Packager: Athemis
Votes: 8
Popularity: 0.175496
First Submitted: 2011-12-20 15:12
Last Updated: 2015-07-06 20:33

Dependencies (0)

Required by (1)

Sources (2)

Latest Comments

sauliusl commented on 2015-01-16 11:43

PKGBUILD for 1.1.1:
http://pastebin.com/CUNi5u9s

sauliusl commented on 2015-01-15 17:02

The paste below is broken, here's how to update for 1.1.1:

http://pastebin.com/VNxLLkfL

vejnar commented on 2014-11-12 00:46

Updated for 1.1.1

http://pastebin.com/M2ptymtb

balwierz commented on 2014-11-05 16:20

version 1.1.1 is out

wookietreiber commented on 2014-07-24 09:17

Please also add the scipts directory to $pkgdir/usr/bin!

balwierz commented on 2014-04-03 14:04

version 1.0.1 is out.

Athemis commented on 2013-06-26 14:31

Thanks! It's sufficient to just use 'uname -m' instead. I added a patch in the updated package.

Anonymous comment on 2013-06-24 18:14

Makefile uses uname -p to look for x86_64 architecture on line 110, but that and the -i flag kinda got dropped:
https://bbs.archlinux.org/viewtopic.php?id=141548

I changed line 110 to the following, which works for me:
ifneq (0, $(shell grep flags /proc/cpuinfo | grep lm -c))

Hope this is the right place to put this.

Athemis commented on 2012-07-31 22:51

Now correctly builds with gcc-4.7

Athemis commented on 2012-05-15 09:33

Updated

qifei9 commented on 2012-05-15 08:18

0.12.8 release - 5/6/12