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Package Details: bowtie2-git 2.5.4.r4.gb7e97e9-1

Package Actions

Git Clone URL:	https://aur.archlinux.org/bowtie2-git.git (read-only, click to copy)
Package Base:	bowtie2-git
Description:	Tool for aligning sequencing reads to long reference sequences
Upstream URL:	https://bowtie-bio.sourceforge.net/bowtie2
Licenses:	GPL-3.0-only
Conflicts:	bowtie2
Provides:	bowtie2
Submitter:	greyltc
Maintainer:	a821
Last Packager:	a821
Votes:	0
Popularity:	0.000000
First Submitted:	2016-07-04 21:59 (UTC)
Last Updated:	2025-05-09 07:09 (UTC)

Dependencies (5)

perl (perl-git^AUR)
python
cmake (cmake3^AUR, cmake-git^AUR) (make)
git (git-git^AUR, git-gl^AUR) (make)
jdk-openjdk (jdk16-adoptopenjdk^AUR, jdk23-temurin^AUR, zing-23-bin^AUR, openjdk-zulu-ca-fx-bin^AUR, openjdk-zulu8-ca-fx-bin^AUR, openjdk-zulu11-ca-fx-bin^AUR, openjdk-zulu17-ca-fx-bin^AUR, openjdk-zulu21-ca-fx-bin^AUR, jdk-temurin^AUR, jdk21-temurin^AUR, jdk17-temurin^AUR, jdk11-temurin^AUR, zing-21-bin^AUR, zing-17-bin^AUR, openjdk-liberica11-full-bin^AUR, openjdk-liberica17-full-bin^AUR, openjdk-liberica21-full-bin^AUR, openjdk-liberica8-full-bin^AUR, openjdk-liberica-full-bin^AUR) (make)

Required by (7)

getorganelle (requires bowtie2)
rgbepp (requires bowtie2)
rsem (requires bowtie2) (optional)
tophat (requires bowtie2)
ugene-bin (requires bowtie2) (optional)
ugene-git (requires bowtie2) (optional)
unicycler (requires bowtie2) (optional)

Sources (5)