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Package Details: coot 1.1.10-3

Package Actions

Git Clone URL:	https://aur.archlinux.org/coot.git (read-only, click to copy)
Package Base:	coot
Description:	Crystallographic Object-Oriented Toolkit for model building, completion and validation
Upstream URL:	https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Keywords:	science
Licenses:	GPL
Replaces:	coot-data
Submitter:	Athemis
Maintainer:	hgonomeg
Last Packager:	hgonomeg
Votes:	2
Popularity:	0.000000
First Submitted:	2016-01-12 02:53 (UTC)
Last Updated:	2024-09-20 17:40 (UTC)

Dependencies (23)

boost-libs
cairo (cairo-git^AUR)
curl (curl-quiche-git^AUR, curl-http3-ngtcp2^AUR, curl-git^AUR, curl-c-ares^AUR)
fftw2-float^AUR
glib2 (glib2-git^AUR, glib2-selinux^AUR, glib2-patched-thumbnailer^AUR)
glm (glm-git^AUR)
gsl (gsl-git^AUR)
gtk4 (gtk4-customizable^AUR, gtk4-paper-plane^AUR, gtk4-git^AUR)
guile (guile-git^AUR)
libccp4^AUR (libccp4-bzr^AUR)
libclipper^AUR
libgl (nvidia-340xx-utils^AUR, libglvnd-git^AUR, amdgpu-pro-oglp^AUR, amdgpu-pro-oglp-legacy^AUR, libglvnd)
libssm^AUR
mmdb2^AUR
python (python37^AUR, python311^AUR, python310^AUR)
python-gobject (python-gobject-git^AUR)
rdkit^AUR (rdkit-inchi^AUR)
sqlite (sqlite-fossil^AUR)
swig (swig-git^AUR)
zlib (zlib-ng-compat-git^AUR, zlib-git^AUR, zlib-ng-compat)
bc (bc-gh^AUR) (make)
boost (boost-git^AUR) (make)
which (busybox-coreutils^AUR) (make)

Required by (0)

Sources (4)

Pinned Comments

hgonomeg commented on 2024-09-10 21:15 (UTC)

Hi, I've adopted the package. Now it's the newest version (1.1.10).

If there's anything broken, let me know. Particularly, I don't know if Coot 1 supports Guile GUI at all.

At the time of posting this, there is just one dependency that fails to build and that is fftw2-float where openmpi is broken. The workaround is to edit the PKGBUILD and remove --with-openmpi in both places where it occurs.

All remaining dependencies should build just fine.

Athemis commented on 2018-07-10 19:44 (UTC)

Binary packages of coot and its dependencies can be found in my repo. Add these lines to your /etc/pacman.conf:

[home_Athemis_coot_Arch]
SigLevel = Never
Server = https://download.opensuse.org/repositories/home:/Athemis:/coot/Arch/$arch

And install coot via pacman -Syu & pacman -S coot

Latest Comments

1 2 3 Next › Last »

hgonomeg commented on 2024-09-10 21:15 (UTC)

Hi, I've adopted the package. Now it's the newest version (1.1.10).

If there's anything broken, let me know. Particularly, I don't know if Coot 1 supports Guile GUI at all.

All remaining dependencies should build just fine.

Livia commented on 2022-12-20 03:59 (UTC)

Hi, is anyone else having trouble using and/or installing it? Something related with mmdb2

archiebald commented on 2020-04-16 01:52 (UTC)

0.8.9.2 works great. Thanks! Looking forward to 0.9.

Athemis commented on 2020-04-15 09:12 (UTC) (edited on 2020-04-15 09:41 (UTC) by Athemis)

I'm currently struggling to get version 0.9 to compile. I'll push 0.8.9.2 up soon (which is the version currently shipped with the CCP4 suite). This will as usual need an old version of python2-rdkit (<=2017_09_3).

archiebald commented on 2019-09-17 01:54 (UTC)

Thanks, works great!

Athemis commented on 2019-09-16 10:58 (UTC)

@archiebald: A new binary package is now available. Have fun ;)

archiebald commented on 2019-09-14 14:57 (UTC)

Hi Athemis - My coot-0.8.9.1-3 installed from your binaries on repo home_Athemis_coot_Arch recently stopped working. I see there has been an update to coot-0.8.9.1-4. Would you be able to update your binary packages in your repo as well? I see some of them have recently been updated (e.g. mmdb2). Your help is much appreciated!

Athemis commented on 2019-09-13 11:48 (UTC) (edited on 2019-09-13 11:48 (UTC) by Athemis)

@ywen232625: rdkit-python2 has been fixed in the latest AUR version (depends on python2-cairo now). However, coot will most likely fail to build against this version. You'll need to edit the version in the python2-rdkit PKGBUILD to read "2017_09_03" and then either regenerate the source hashes (install pacman-contrib package and run "updpkgsums") or ignore them (makepkg --skipinteg).

ywen232625 commented on 2019-08-06 16:12 (UTC)

Hi, I have some trouble when trying to install rdkit-python2, it shows that I need to install "python2-cairocffi" in order to install rdkit-python2. And I found that there is no way to install python2-cairocffi. Can you help me out? Thanks in advance

archiebald commented on 2018-10-14 02:45 (UTC) (edited on 2018-10-15 03:29 (UTC) by archiebald)

[SOLVED] Hardware stereo is working now. Had to turn of compositor in KDE Plasma.

@Athemis: Thanks for making your binaries available. Things work fine on my system except for stereo. Can anyone confirm that hardware stereo is actually working with this build?

1 2 3 Next › Last »