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Package Details: cytoscape 3.10.2-1

Package Actions

Git Clone URL:	https://aur.archlinux.org/cytoscape.git (read-only, click to copy)
Package Base:	cytoscape
Description:	Network Data Integration, Analysis, and Visualization in a Box
Upstream URL:	https://www.cytoscape.org
Licenses:	LGPL-2.1-only
Submitter:	timdiels
Maintainer:	a821
Last Packager:	a821
Votes:	12
Popularity:	0.003419
First Submitted:	2015-09-22 13:00 (UTC)
Last Updated:	2024-03-27 20:00 (UTC)

Dependencies (3)

bash (bash-devel-static-git^AUR, bash-git^AUR, bash-devel-git^AUR, busybox-coreutils^AUR)
java-runtime (jre10^AUR, jre12^AUR, server-jre^AUR, jdk10^AUR, jdk10-openj9-bin^AUR, jdk7^AUR, jre7^AUR, amazon-corretto-16^AUR, jdk8-graalvm-bin^AUR, jdk16-graalvm-bin^AUR, jdk16-adoptopenjdk^AUR, jdk16-microsoft-openjdk^AUR, jdk8-arm^AUR, liberica-jre-11-bin^AUR, jdk11-j9-bin^AUR, jre11-jbr-xdg^AUR, jre16-openjdk^AUR, jre14-openjdk^AUR, amazon-corretto-18^AUR, jre15^AUR, jre14^AUR, jre13^AUR, jre16^AUR, jre18-openjdk^AUR, jdk-android-studio^AUR, amazon-corretto-19-bin^AUR, jdk19-graalvm-bin^AUR, liberica-jre-11-full-bin^AUR, jdk19-graalvm-ee-bin^AUR, jdk13-openjdk-bin^AUR, liberica-jre-8-full-bin^AUR, jdk11-graalvm-bin^AUR, jre19-openjdk^AUR, jre-openj9^AUR, jdk11-graalvm-ee-bin^AUR, jdk11-openjdk-dcevm^AUR, jre12-openjdk^AUR, jdk11-dragonwell-standard-bin^AUR, jdk11-jetbrains-bin^AUR, jdk20-graalvm-bin^AUR, jdk17-graalvm-bin^AUR, jdk8-graalvm-ee-bin^AUR, amazon-corretto-20-bin^AUR, zulu-15-bin^AUR, jdk20-openj9-bin^AUR, zulu-13-bin^AUR, jdk8-dragonwell-extended-bin^AUR, jdk8-dragonwell-standard-bin^AUR, jdk11-dragonwell-extended-bin^AUR, jdk17-dragonwell-standard-bin^AUR, jdk20-graalvm-ee-bin^AUR, jre11^AUR, jdk8-j9-bin^AUR, jdk7-j9-bin^AUR, jdk7r1-j9-bin^AUR, jdk8-dragonwell-extended^AUR, jre17^AUR, jre13-openjdk^AUR, jre15-openjdk^AUR, jdk21-graalvm-bin^AUR, liberica-jdk-17-full-bin^AUR, liberica-jdk-11-bin^AUR, liberica-jdk-11-full-bin^AUR, liberica-jdk-11-lite-bin^AUR, mandrel-bin^AUR, jdk17-openj9-bin^AUR, jdk21-graalvm-ee-bin^AUR, jdk17-graalvm-ee-bin^AUR, jdk8^AUR, jre8^AUR, jdk17-zulu-prime-bin^AUR, jdk-openj9-bin^AUR, jdk11-openj9-bin^AUR, jre17-jetbrains^AUR, jre-jetbrains^AUR, jdk17-jetbrains-bin^AUR, jre21-jetbrains^AUR, jdk21-jetbrains-bin^AUR, jre21-jetbrains-git^AUR, jre-openjdk-wakefield^AUR, jdk-openjdk-wakefield^AUR, jdk8-perf^AUR, zulu-jdk-fx-bin^AUR, jdk8-openj9-bin^AUR, zulu-jre-fx-bin^AUR, jdk-temurin^AUR, amazon-corretto-22-bin^AUR, jdk22-graalvm-bin^AUR, zing-8-bin^AUR, zing-21-bin^AUR, java-openjdk-ea-bin^AUR, amazon-corretto-17^AUR, amazon-corretto-21-bin^AUR, java-openjdk-bin^AUR, liberica-jdk-full-bin^AUR, liberica-jdk-21-full-bin^AUR, liberica-jdk-8-full-bin^AUR, zulu-21-bin^AUR, zulu-8-bin^AUR, zulu-11-bin^AUR, zulu-17-bin^AUR, jdk21-temurin^AUR, jdk17-temurin^AUR, jdk11-temurin^AUR, amazon-corretto-8^AUR, amazon-corretto-11^AUR, jdk8-temurin^AUR, jre^AUR, jdk^AUR, jre-lts^AUR, jdk-openjdk, jdk11-openjdk, jdk17-openjdk, jdk21-openjdk, jre-openjdk, jre11-openjdk, jre17-openjdk, jre21-openjdk, jre8-openjdk)
opencl-driver (opencl-nvidia-410xx^AUR, amdapp-sdk^AUR, opencl-nvidia-340xx^AUR, opencl-nvidia-440xx^AUR, vc4cl-git^AUR, intel-opencl-runtime^AUR, opencl-nvidia-430xx^AUR, opencl-legacy-amdgpu-pro^AUR, opencl-510xx-nvidia^AUR, intel-compute-runtime-git^AUR, beignet^AUR, mesa-nightly-nvk-rusticl-intelrt-git^AUR, opencl-nvidia-vulkan^AUR, beignet-git^AUR, intel-opencl^AUR, intel-cpu-runtime^AUR, opencl-nvidia-tesla^AUR, amdonly-gaming-opencl-clover-mesa-git^AUR, amdonly-gaming-opencl-rusticl-mesa-git^AUR, opencl-nvidia-470xx^AUR, opencl-nvidia-390xx^AUR, opencl-nvidia-535xx^AUR, opencl-rusticl-mesa-minimal-git^AUR, mesa-git^AUR, opencl-amd^AUR, intel-compute-runtime-bin^AUR, opencl-nvidia-525xx^AUR, opencl-nvidia-beta^AUR, intel-compute-runtime, opencl-clover-mesa, opencl-nvidia, opencl-rusticl-mesa, rocm-opencl-runtime) (optional) – for OpenCL support

Required by (1)

r-metaphor (optional)

Sources (6)

Latest Comments

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timdiels commented on 2017-06-20 08:33 (UTC)

If you anyone still gets "JAVA_HOME not set", set it in your shell's login script (~/.bash_profile, /etc/profile.d): export JAVA_HOME=/usr/lib/jvm/default

pwl commented on 2016-11-02 13:36 (UTC)

It doesn't work, I'm getting: $ cytoscape karaf: JAVA_HOME not set; results may vary Exception in thread "main" java.lang.UnsupportedClassVersionError: org/cytoscape/launcher/internal/Launcher : Unsupported major.minor version 52.0 at java.lang.ClassLoader.defineClass1(Native Method) at java.lang.ClassLoader.defineClass(ClassLoader.java:803) at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142) at java.net.URLClassLoader.defineClass(URLClassLoader.java:449) at java.net.URLClassLoader.access$100(URLClassLoader.java:71) at java.net.URLClassLoader$1.run(URLClassLoader.java:361) at java.net.URLClassLoader$1.run(URLClassLoader.java:355) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:354) at java.lang.ClassLoader.loadClass(ClassLoader.java:425) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308) at java.lang.ClassLoader.loadClass(ClassLoader.java:358) at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:482)

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