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Package Details: emboss 6.6.0-3
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Git Clone URL: | https://aur.archlinux.org/emboss.git (read-only, click to copy) |
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Package Base: | emboss |
Description: | A collection of molecular biology applications |
Upstream URL: | http://emboss.sourceforge.net/ |
Licenses: | GPL2 |
Submitter: | Allan |
Maintainer: | mschu |
Last Packager: | mschu |
Votes: | 20 |
Popularity: | 0.000000 |
First Submitted: | 2008-12-28 12:20 (UTC) |
Last Updated: | 2020-05-11 20:54 (UTC) |
Dependencies (8)
- gd (gd-gitAUR)
- java-runtime (jre10AUR, jre12AUR, jdk10AUR, jdk10-openj9-binAUR, jdk7AUR, jre7AUR, amazon-corretto-16AUR, jdk8-graalvm-binAUR, jdk16-graalvm-binAUR, jdk16-adoptopenjdkAUR, liberica-jre-11-binAUR, jdk11-j9-binAUR, jre11-jbr-xdgAUR, jre16-openjdkAUR, jre14-openjdkAUR, jre15AUR, jre14AUR, jre13AUR, jre16AUR, jre18-openjdkAUR, amazon-corretto-19-binAUR, jdk19-graalvm-binAUR, liberica-jre-11-full-binAUR, jdk19-graalvm-ee-binAUR, jdk13-openjdk-binAUR, liberica-jre-8-full-binAUR, jdk11-graalvm-binAUR, jre-openj9AUR, jdk11-graalvm-ee-binAUR, jre12-openjdkAUR, jdk11-dragonwell-standard-binAUR, jdk11-jetbrains-binAUR, jdk20-graalvm-binAUR, jdk17-graalvm-binAUR, jdk8-graalvm-ee-binAUR, jdk20-openj9-binAUR, zulu-13-binAUR, jdk8-dragonwell-extended-binAUR, jdk8-dragonwell-standard-binAUR, jdk11-dragonwell-extended-binAUR, jdk17-dragonwell-standard-binAUR, jre11AUR, jdk8-j9-binAUR, jdk7-j9-binAUR, jdk7r1-j9-binAUR, jdk8-dragonwell-extendedAUR, jre13-openjdkAUR, jre15-openjdkAUR, jdk21-graalvm-binAUR, jre17-jetbrainsAUR, jdk8-openj9-binAUR, jre-ltsAUR, microsoft-openjdk-11-binAUR, microsoft-openjdk-17-binAUR, microsoft-openjdk-21-binAUR, liberica-nik-24-full-binAUR, jre21-jetbrains-gitAUR, jdk21-jetbrains-gitAUR, zulu-17-binAUR, zulu-11-binAUR, zulu-8-binAUR, mandrel-binAUR, mandrel24-binAUR, liberica-jdk-17-full-binAUR, liberica-jdk-11-lite-binAUR, liberica-jdk-11-full-binAUR, liberica-jdk-11-binAUR, jdk17-graalvm-ee-binAUR, jdk21-graalvm-ee-binAUR, jdk22-graalvm-ee-binAUR, jdk20-graalvm-ee-binAUR, jdk22-graalvm-binAUR, jre19-openjdkAUR, jdk17-jetbrains-binAUR, zulu-jdk-fx-binAUR, jre21-jetbrainsAUR, jdk17-zulu-prime-binAUR, zing-21-binAUR, zing-8-binAUR, jdk23-graalvm-ee-binAUR, jre17AUR, java-openjdk-binAUR, jre21-zulu-binAUR, amazon-corretto-17AUR, amazon-corretto-21-binAUR, jre17-zulu-binAUR, jdk21-temurinAUR, amazon-corretto-8AUR, amazon-corretto-11AUR, jdk11-temurinAUR, liberica-jdk-full-binAUR, liberica-jdk-21-full-binAUR, liberica-jdk-8-full-binAUR, jdk17-temurinAUR, jdk8-temurinAUR, zulu-21-binAUR, jdk-temurinAUR, jre8AUR, jdk8AUR, zulu-17-fx-binAUR, jdk8-perfAUR, zulu-jre-fx-binAUR, zulu-fx-binAUR, zulu8-fx-binAUR, zulu11-fx-binAUR, zulu17-fx-binAUR, zulu21-fx-binAUR, jdk-openj9-binAUR, jdk11-openj9-binAUR, jre-jetbrainsAUR, jre-openjdk-wakefieldAUR, jdk-openjdk-wakefieldAUR, jdk21-openj9-binAUR, zulu-23-binAUR, jreAUR, jdkAUR, jdk21-jetbrains-binAUR, jre-zulu-binAUR, jre-zulu-fx-binAUR, jdk21-dragonwell-standard-binAUR, jdk21-dragonwell-extended-binAUR, jdk-android-studioAUR, jre-zuluAUR, jre-zulu-fxAUR, jdk17-openj9-binAUR, java-openjdk-ea-binAUR, jdk-openjdk, jdk11-openjdk, jdk17-openjdk, jdk21-openjdk, jre-openjdk, jre11-openjdk, jre17-openjdk, jre21-openjdk, jre8-openjdk)
- pcre
- java-environment (jdk12AUR, jdk10AUR, jdk10-openj9-binAUR, jdk7AUR, amazon-corretto-16AUR, jdk8-graalvm-binAUR, jdk16-graalvm-binAUR, jdk16-adoptopenjdkAUR, liberica-jre-11-binAUR, jdk11-j9-binAUR, jdk11-jbr-xdgAUR, jdk16-openjdkAUR, jdk14-openjdkAUR, jdk18-openjdkAUR, amazon-corretto-19-binAUR, jdk19-graalvm-binAUR, liberica-jre-11-full-binAUR, jdk19-graalvm-ee-binAUR, jdk13-openjdk-binAUR, liberica-jre-8-full-binAUR, jdk11-graalvm-binAUR, jdk-openj9AUR, jdk11-graalvm-ee-binAUR, jdk12-openjdkAUR, jdk11-dragonwell-standard-binAUR, jdk11-jetbrains-binAUR, jdk20-graalvm-binAUR, jdk17-graalvm-binAUR, jdk8-graalvm-ee-binAUR, jdk20-openj9-binAUR, zulu-13-binAUR, jdk8-dragonwell-extended-binAUR, jdk8-dragonwell-standard-binAUR, jdk11-dragonwell-extended-binAUR, jdk17-dragonwell-standard-binAUR, jdk11AUR, jdk8-j9-binAUR, jdk7-j9-binAUR, jdk7r1-j9-binAUR, jdk8-dragonwell-extendedAUR, jdk13-openjdkAUR, jdk15-openjdkAUR, jdk21-graalvm-binAUR, jdk17-jetbrainsAUR, jdk8-openj9-binAUR, jdk-ltsAUR, microsoft-openjdk-11-binAUR, microsoft-openjdk-17-binAUR, microsoft-openjdk-21-binAUR, liberica-nik-24-full-binAUR, jdk21-jetbrains-gitAUR, zulu-17-binAUR, zulu-11-binAUR, zulu-8-binAUR, mandrel-binAUR, mandrel24-binAUR, liberica-jdk-17-full-binAUR, liberica-jdk-11-lite-binAUR, liberica-jdk-11-full-binAUR, liberica-jdk-11-binAUR, jdk17-graalvm-ee-binAUR, jdk21-graalvm-ee-binAUR, jdk22-graalvm-ee-binAUR, jdk20-graalvm-ee-binAUR, jdk22-graalvm-binAUR, jdk19-openjdkAUR, jdk17-jetbrains-binAUR, zulu-jdk-fx-binAUR, jabba-binAUR, jdk21-jetbrainsAUR, jdk17-zulu-prime-binAUR, zing-21-binAUR, zing-8-binAUR, jdk23-graalvm-ee-binAUR, java-openjdk-binAUR, amazon-corretto-17AUR, amazon-corretto-21-binAUR, jdk21-temurinAUR, amazon-corretto-8AUR, amazon-corretto-11AUR, jdk11-temurinAUR, liberica-jdk-full-binAUR, liberica-jdk-21-full-binAUR, liberica-jdk-8-full-binAUR, jdk17-temurinAUR, jdk8-temurinAUR, zulu-21-binAUR, jdk-temurinAUR, jdk8AUR, zulu-17-fx-binAUR, jdk8-perfAUR, zulu-fx-binAUR, zulu8-fx-binAUR, zulu11-fx-binAUR, zulu17-fx-binAUR, zulu21-fx-binAUR, jdk-openj9-binAUR, jdk11-openj9-binAUR, jre-jetbrainsAUR, jdk-openjdk-wakefieldAUR, jdk21-openj9-binAUR, zulu-23-binAUR, jdkAUR, jdk21-jetbrains-binAUR, jre-zulu-binAUR, jre-zulu-fx-binAUR, jdk21-dragonwell-standard-binAUR, jdk21-dragonwell-extended-binAUR, jdk-android-studioAUR, jre-zuluAUR, jre-zulu-fxAUR, jdk17-openj9-binAUR, java-openjdk-ea-binAUR, jdk-openjdk, jdk11-openjdk, jdk17-openjdk, jdk21-openjdk, jdk8-openjdk) (make)
- libmariadbclient (libmysqlclient55AUR, libmysqlclient56AUR, mariadb-libs-gitAUR, libmysqlclient81AUR, libmysqlclient57AUR, libmysqlclientAUR, libmysqlclient80AUR, mariadb-libs, mariadb-lts-libs) (make)
- postgresql-libs (postgresql-libs-12AUR, postgresql13-libsAUR, postgresql-libs-gitAUR) (make)
- libmariadbclient (libmysqlclient55AUR, libmysqlclient56AUR, mariadb-libs-gitAUR, libmysqlclient81AUR, libmysqlclient57AUR, libmysqlclientAUR, libmysqlclient80AUR, mariadb-libs, mariadb-lts-libs) (optional)
- postgresql-libs (postgresql-libs-12AUR, postgresql13-libsAUR, postgresql-libs-gitAUR) (optional)
Latest Comments
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slackalaxy commented on 2022-03-15 17:41 (UTC) (edited on 2022-03-15 17:47 (UTC) by slackalaxy)
hi guys, to avoid emboss installing binaries that conflict with something else, you can always install them to a custom location, e.g.
/usr/lib/emboss/bin
, by passing this at compile time:--bindir=/usr/lib/emboss/bin
Simply renaming them will make them lost for
wossname
and jEmboss. To make jEmboss aware of it, you shouldsed
a few lines injemboss/resources/jemboss.properties
after compilation is done. I use Crux at the moment, and I do this:for more info, here's my Pkgfile: https://github.com/slackalaxy/crux-ports/blob/main/scientific/emboss/Pkgfile
hope this is useful
-petar
Rhinoceros commented on 2020-05-11 07:57 (UTC)
I feel like history is repeating itself, but…
Like the two previous commentators (from over two years ago now!), install failed because installation of
/usr/bin/wordcount
conflicts withtexlive-latexextra
. IMO there really shouldn't be conflicts with official packages, especially when it's something as common as this.I fixed it by just installing
/usr/bin/wordcount
under a different name:ironcyborg commented on 2020-02-10 14:35 (UTC)
The file conflict between this and 'texlive-latexextra' on '/usr/bin/wordcount' is unfortunately still present. Any suggestion?
anadon commented on 2018-04-30 22:24 (UTC)
There is a file conflict between this and 'texlive-latexextra' on '/usr/bin/wordcount' which needs to be addressed.
mschu commented on 2018-03-02 10:21 (UTC)
emboss now puts its .h files in /usr/include/emboss/*. This should solve all conflicting headers, and libs work on my machine.
anadon commented on 2018-02-28 18:29 (UTC) (edited on 2018-02-28 19:34 (UTC) by anadon)
@mschu Please merge in previous commenter's fixes for this package. But this doesn't fully fix the problem.
Rhinoceros commented on 2016-09-05 06:35 (UTC)
slackalaxy commented on 2016-06-17 10:29 (UTC)
anntzer commented on 2016-05-05 17:38 (UTC)
hobbypunk commented on 2015-12-09 22:53 (UTC)
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