Package Details: fiji-bin 2:20250302.2217-1

Git Clone URL: https://aur.archlinux.org/fiji-bin.git (read-only, click to copy)
Package Base: fiji-bin
Description: ImageJ distribution with a lot of plugins for scientific (especially biology related) image processing.
Upstream URL: http://fiji.sc/
Licenses: GPL
Submitter: hottea
Maintainer: flomine
Last Packager: flomine
Votes: 25
Popularity: 0.46
First Submitted: 2019-11-15 07:19 (UTC)
Last Updated: 2025-03-04 16:29 (UTC)

Dependencies (4)

Required by (1)

Sources (1)

Latest Comments

« First ‹ Previous 1 2 3 4 Next › Last »

lezsakdomi commented on 2021-11-25 14:39 (UTC)

Oracle JRE does not help either.

(I tried fiji --system --java-home /usr/lib/jvm/java-17-jdk)

lezsakdomi commented on 2021-11-25 14:23 (UTC) (edited on 2021-11-25 14:26 (UTC) by lezsakdomi)

I get the same error when starting it with fiji --system or without.

I have OpenJDK 17.0.1+12

fiji --ij1 works though.

SPW_87 commented on 2021-08-29 17:33 (UTC)

@iosonofabio I am getting the same error. The previous version 20201029-1752 works fine though.

From what I can tell the issue seems to be with the jre that is bundled with Fiji, as it looks like it was changed between these two versions. 20201029-1752 uses jdk1.8.0_172 and 20201104-1356 uses zulu8.48.0.53-ca-fx-jdk8.0.265-linux_x64.

hottea commented on 2021-08-25 07:58 (UTC)

fiji-bin uses a bundled jre, not the one from your system. You might need to check your jre config.

iosonofabio commented on 2021-08-25 04:43 (UTC)

Thanks for maintaining the package. I get a Java error after launching:

Error while executing the main() method of class 'net.imagej.Main': java.lang.NullPointerException: Cannot invoke "net.imagej.legacy.LegacyService.getIJ1Helper()" because "this.legacyService" is null

(among many lines of traceback).

I have:

jre-openjdk 16.0.2.u7-1 jre 16.0.2-1

as JRE providers. Would you know what's wrong?

Thank you Fabio

hello commented on 2021-02-12 21:30 (UTC)

It appears that the 20201104-2027 directory has disappeared and the latest version is instead 20201104-1356.

See https://downloads.imagej.net/fiji/archive/

The current source responds with a 404.

Is it possible to manually intervene and correct this?

Thanks

hottea commented on 2020-04-21 14:13 (UTC)

@drcont78 This pkg is automatically updated by a robot lilac from ArchLinuxCN repo. Here is the latest build log. I don't see any error. You might check it again, or you could just install this pkg from ArchLinuxCN repo.

dront78 commented on 2020-04-21 07:56 (UTC) 

prepare()...
Creating desktop file
[fiji]                            Generating desktop file... ok
:: failed to verify integrity or prepare fiji-bin package

ryn1x commented on 2020-04-20 21:40 (UTC) (edited on 2020-04-20 21:42 (UTC) by ryn1x)

failed validity check

==> Retrieving sources...
  -> Found fiji-linux64.zip
==> Validating source files with sha256sums...
    fiji-linux64.zip ... FAILED
==> ERROR: One or more files did not pass the validity check!
Failed to build fiji-bin

dront78 commented on 2020-01-28 15:29 (UTC)

https://downloads.imagej.net/fiji/latest/fiji-linux64.zip can be a solution

« First ‹ Previous 1 2 3 4 Next › Last »