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Package Details: flair 2.0.0-1
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| Git Clone URL: | https://aur.archlinux.org/flair.git (read-only, click to copy) |
|---|---|
| Package Base: | flair |
| Description: | Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads |
| Upstream URL: | https://github.com/BrooksLabUCSC/flair |
| Keywords: | cdna nanopore pacbio rna |
| Licenses: | BSD |
| Submitter: | kbipinkumar |
| Maintainer: | kbipinkumar (BioArchLinuxBot) |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2023-03-02 10:00 (UTC) |
| Last Updated: | 2023-06-14 00:01 (UTC) |
Dependencies (26)
- bedtoolsAUR
- minimap2AUR (minimap2-gitAUR, minimap2-binAUR)
- python (python37AUR, python311AUR, python310AUR)
- python-mappyAUR
- python-nclsAUR
- python-numpy (python-numpy-flameAUR, python-numpy-gitAUR, python-numpy1AUR, python-numpy-mkl-tbbAUR, python-numpy-mklAUR, python-numpy-mkl-binAUR)
- python-pybedtoolsAUR
- python-pysamAUR (python-pysamAUR)
- python-tqdm
- samtoolsAUR (samtools-gitAUR)
- cython (cython-gitAUR, cython0AUR) (make)
- python-build (make)
- python-installer (python-installer-gitAUR) (make)
- python-setuptools (make)
- python-wheel (make)
- cython (cython-gitAUR, cython0AUR) (optional)
- python-matplotlib (python-matplotlib-gitAUR) (optional)
- python-pandas (optional)
- python-rpy2 (optional)
- python-seaborn (optional)
- Show 6 more dependencies...