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Package Details: flair 2.0.0-1
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| Git Clone URL: | https://aur.archlinux.org/flair.git (read-only, click to copy) |
|---|---|
| Package Base: | flair |
| Description: | Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads |
| Upstream URL: | https://github.com/BrooksLabUCSC/flair |
| Keywords: | cdna nanopore pacbio rna |
| Licenses: | BSD |
| Submitter: | kbipinkumar |
| Maintainer: | kbipinkumar (BioArchLinuxBot) |
| Last Packager: | BioArchLinuxBot |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2023-03-02 10:00 (UTC) |
| Last Updated: | 2023-06-14 00:01 (UTC) |
Dependencies (26)
- bedtools (bedtools-git)
- minimap2 (minimap2-git, minimap2-bin)
- python (python36, python32, python37, python39, python38, python310, python312)
- python-mappy
- python-ncls
- python-numpy (python-numpy1.22, python-numpy-flame, python-numpy-mkl-bin, python-numpy-git, python-numpy-openblas, python-numpy-mkl)
- python-pybedtools
- python-pysam (python-pysam)
- python-tqdm
- samtools (samtools-git)
- cython (cython-git, cython0) (make)
- python-build (make)
- python-installer (python-installer-git) (make)
- python-setuptools (make)
- python-wheel (make)
- cython (cython-git, cython0) (optional)
- python-matplotlib (python-matplotlib-git) (optional)
- python-pandas (optional)
- python-rpy2 (optional)
- python-seaborn (optional)
- Show 6 more dependencies...