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Package Details: flair 2.0.0-1

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Git Clone URL:	https://aur.archlinux.org/flair.git (read-only, click to copy)
Package Base:	flair
Description:	Tool for correction, isoform definition, and alternative splicing analysis of nanopore cDNA, native RNA, and PacBio sequencing reads
Upstream URL:	https://github.com/BrooksLabUCSC/flair
Keywords:	cdna nanopore pacbio rna
Licenses:	BSD
Submitter:	kbipinkumar
Maintainer:	kbipinkumar (BioArchLinuxBot)
Last Packager:	BioArchLinuxBot
Votes:	0
Popularity:	0.000000
First Submitted:	2023-03-02 10:00 (UTC)
Last Updated:	2023-06-14 00:01 (UTC)

Dependencies (26)

bedtools^AUR
minimap2^AUR (minimap2-git^AUR, minimap2-bin^AUR)
python (python37^AUR, python311^AUR, python310^AUR)
python-mappy^AUR
python-ncls^AUR
python-numpy (python-numpy-flame^AUR, python-numpy-git^AUR, python-numpy1^AUR, python-numpy-mkl-tbb^AUR, python-numpy-mkl^AUR, python-numpy-mkl-bin^AUR)
python-pybedtools^AUR
python-pysam^AUR (python-pysam^AUR)
python-tqdm
samtools^AUR (samtools-git^AUR)
cython (cython-git^AUR, cython0^AUR) (make)
python-build (make)
python-installer (python-installer-git^AUR) (make)
python-setuptools (make)
python-wheel (make)
cython (cython-git^AUR, cython0^AUR) (optional)
python-matplotlib (python-matplotlib-git^AUR) (optional)
python-pandas (optional)
python-rpy2 (optional)
python-seaborn (optional)
r (r352^AUR, r-mkl^AUR) (optional)
r-deseq2^AUR (optional)
r-drimseq^AUR (optional)
r-ggplot2^AUR (optional)
r-qqman^AUR (optional)
r-stager^AUR (optional)

Required by (0)

Sources (1)

https://files.pythonhosted.org/packages/source/f/flair-brookslab/flair-brookslab-2.0.0.tar.gz