Package Details: freebayes 1.3.8-2

Git Clone URL: https://aur.archlinux.org/freebayes.git (read-only, click to copy)
Package Base: freebayes
Description: About Bayesian haplotype-based genetic polymorphism discovery and genotyping
Upstream URL: https://github.com/freebayes/freebayes
Keywords: bioinformatics call mutation polymorphism sequencing variant
Licenses: MIT
Submitter: clintval
Maintainer: BioArchLinuxBot
Last Packager: BioArchLinuxBot
Votes: 2
Popularity: 0.000000
First Submitted: 2017-12-07 01:38 (UTC)
Last Updated: 2024-06-04 18:05 (UTC)

Dependencies (13)

Required by (0)

Sources (4)

Latest Comments

malacology commented on 2022-07-11 22:08 (UTC) (edited on 2022-07-11 22:08 (UTC) by malacology)

fixed it now, thanks for sukanka's contribution. Now it's avaiable at BioArchLinux

For maintaing problems, please open an issue on https://github.com/BioArchLinux/Packages

clintval commented on 2018-08-30 21:25 (UTC)

You're correct! Oddly enough the PKGBUILD builds the second time you run makepkg. I need to debug. Thanks for reporting.

benwbooth commented on 2018-08-27 21:34 (UTC) (edited on 2018-08-27 21:35 (UTC) by benwbooth)

Im getting compile errors when trying to build:

g++ -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -O3 -c -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp -I.
In file included from ../vcflib/src/Variant.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:197: Variant.o] Error 1
In file included from AlleleParser.h:31,
                 from DataLikelihood.h:20,
                 from DataLikelihood.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
In file included from AlleleParser.h:31,
                 from ResultData.h:10,
                 from Marginals.h:6,
                 from Marginals.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:158: DataLikelihood.o] Error 1
make[1]: *** [Makefile:161: Marginals.o] Error 1
In file included from AlleleParser.h:31,
                 from ResultData.h:10,
                 from ResultData.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:164: ResultData.o] Error 1

clintval commented on 2018-04-20 06:05 (UTC)

Although this is built using only hashes from Git repositories it should be locked down to the version as I paired every commit correctly.