Package Details: fsl 6.0.1-2

Git Clone URL: https://aur.archlinux.org/fsl.git (read-only)
Package Base: fsl
Description: A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data
Upstream URL: http://www.fmrib.ox.ac.uk/fsl/
Licenses: custom
Submitter: fishburn
Maintainer: tobac
Last Packager: tobac
Votes: 9
Popularity: 0.000812
First Submitted: 2012-07-02 23:36
Last Updated: 2019-03-23 10:16

Latest Comments

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martin3141 commented on 2019-03-22 14:27

Hi, this is for 6.0.0, but if you're working on 6.0.1 then no need to update as I don't mind waiting for the next version. Thanks for the effort!

tobac commented on 2019-03-22 14:24

Hi Martin, I'm in the process of packaging 6.0.1. Is this the 6.0.0 you're trying to build or did you modify the PKGBUILD etc. yourself for 6.0.1?

martin3141 commented on 2019-03-22 14:13

I'm getting the following error in check():

Starting SIENAX (including testing BET and FLIRT and FAST) at Fri 22 Mar 13:05:59 GMT 2019
child process exited abnormally
while executing
"fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/data/structural $FEEDSDIR/results/structural"" invoked from within
"if { $feeds(sienax) } {

puts "\nStarting SIENAX (including testing BET and FLIRT and FAST) at [ exec date ]"

fsl:exec "${FSLDIR}/bin/imcp $FEEDSDIR/..."
(file "./RUN" line 233)
==> ERROR: A failure occurred in check().
Aborting...

fishburn commented on 2018-11-30 18:31

@tobac Great job with the package! Definitely much cleaner now. I just always hate trying to figure out what changed when the patch no longer applies after a version change (though still better than sed silently failing). Also curious to see if the phenomenon persists where a working package just changes hashes or stops building without any version change.

tobac commented on 2018-11-26 16:54

I adopted the package, rewrote the PKGBUILD to use less sed magic and adopted instead a patch-based modification technique (although having one huge patch file for environment modification doesn't strike me as particularly elegant either). Fishburn is absolutely right, it is an awful package to maintain. Anyway, it builds, tests run successfully and it seems to work.

fishburn commented on 2018-11-14 16:13

I'm abandoning this until they adopt a typical build system (e.g., automake, cmake). Best of luck

VP1 commented on 2018-11-14 07:12

Hi, I tried installing this on my Antergos system. It was not able to install the vtk6 dependency. So, I got the latest vtk package (v8.1.1 community package) installed and linked that in the FSL pkgbuild file. It began installation but aborted from an error in making mist-clean. As per build.log: !!ERROR in BUILD!! Could not make the following projects successfully: mist-clean

Please help resolve this. Thanks!

gbs commented on 2018-06-16 19:58

Just a heads-up that I changed the vtk6 library suffix, and you might want to update your externallibs.mk to match.

fishburn commented on 2018-05-04 15:47

Updated to 5.0.11. I'm now bundling the scripts that were removed in this version.

tobac commented on 2018-05-02 21:24

Oh, that's strange. I'm on the FSL mailing list and haven't had any trouble subscribing.