Package Details: gatk 2:4.0.2.1-1

Git Clone URL: https://aur.archlinux.org/gatk.git (read-only)
Package Base: gatk
Description: Variant discovery in high-throughput bioinformatics sequencing data
Upstream URL: https://software.broadinstitute.org/gatk
Licenses: BSD
Submitter: clintval
Maintainer: clintval
Last Packager: clintval
Votes: 0
Popularity: 0.000000
First Submitted: 2017-12-04 23:56
Last Updated: 2018-04-11 16:36

Latest Comments

Eschwartz commented on 2018-04-26 05:34

No clue what that orphan request is about...

Note this still does currently fail to build in a clean chroot during prepare,

with either jdk9 or jdk10 displaying the erorr:

Could not determine java version from '10.0.1'.
Could not determine java version from '9.0.4'.

With jdk8 it still fails, this time with the error message:

FAILURE: Build failed with an exception.

* Where:
Build file '/build/gatk/src/gatk-4.0.2.1/build.gradle' line: 141

* What went wrong:
A problem occurred evaluating root project 'gatk'.
> Cannot invoke method getURLs() on null object

clintval commented on 2018-04-12 23:21

Not sure why someone is making orphan requests on this. The package works for me. Please submit comments on why it is not working for you or how I can improve it.