Updated package to configure PERLLIB and HHLIB correctly so bundled scripts work out of the box.
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Package Details: hhsuite 2.0.16-2
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| Package Base: | hhsuite |
|---|---|
| Description: | A set of programs for protein sequence homology detection by iterative HMM-HMM comparison for computational biology like PSI-BLAST |
| Upstream URL: | http://hhblits.genzentrum.lmu.de/ |
| Category: | science |
| Licenses: | |
| Submitter: | None |
| Maintainer: | semi |
| Last Packager: | None |
| Votes: | 1 |
| First Submitted: | 2012-02-28 23:52 |
| Last Updated: | 2014-02-27 09:05 |
Dependencies (1)
Required by (0)
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Latest Comments
Comment by semi
Comment by semi
Updated to 2.0.16
Comment by semi
Updated to the new version 2.0.15
Anonymous comment
Disown for adoption.
Anonymous comment
Hi there,
Looks like you're missing a couple of versions, and the source URL has changed. I've included an updated PKGBUILD and a patch that includes unistd.h in hhsearch.
PKGBUILD:
pkgver=2.0.15
...
source=(use_unistd.patch ftp://toolkit.genzentrum.lmu.de/pub/HH-suite/releases/$pkgname-$pkgver.tar.gz)
build()
{
cd $srcdir/$pkgname-$pkgver/
patch -Np0 -i ../use_unistd.patch
make all WITH_NATIVE=1 NO_PNG=1
}
...
md5sums=('cab3b8f636c2fda4a459bbe4bee57fc3' 'f995aeceb710715d6ebd4e1fed6df5db')
use_unistd.patch:
--- src/hhsearch.C 2012-06-15 16:00:13.000000000 +0100
+++ src/hhsearch.C 2012-12-18 15:49:24.726997376 +0000
@@ -44,6 +44,7 @@
#include <errno.h> // perror()
#include <cassert>
#include <stdexcept>
+#include <unistd.h> // access(), R_OK
#ifdef PTHREAD
#include <pthread.h> // POSIX pthread functions and data structures
Anonymous comment
Initial upload.