Package Details: hhsuite 3.2.0-1

Git Clone URL: https://aur.archlinux.org/hhsuite.git (read-only, click to copy)
Package Base: hhsuite
Description: A set of programs for protein sequence homology detection by iterative HMM-HMM comparison for computational biology like PSI-BLAST
Upstream URL: https://github.com/soedinglab/hh-suite
Keywords: bioinformatics hh-suite homology search
Licenses: GPL
Submitter: None
Maintainer: semi
Last Packager: semi
Votes: 1
Popularity: 0.000000
First Submitted: 2012-02-28 23:52 (UTC)
Last Updated: 2019-05-19 04:16 (UTC)

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semi commented on 2013-02-04 11:26 (UTC)

Updated to the new version 2.0.15

<deleted-account> commented on 2013-02-04 11:26 (UTC)

Disown for adoption.

<deleted-account> commented on 2012-12-18 16:03 (UTC)

Hi there, Looks like you're missing a couple of versions, and the source URL has changed. I've included an updated PKGBUILD and a patch that includes unistd.h in hhsearch. PKGBUILD: pkgver=2.0.15 ... source=(use_unistd.patch ftp://toolkit.genzentrum.lmu.de/pub/HH-suite/releases/$pkgname-$pkgver.tar.gz) build() { cd $srcdir/$pkgname-$pkgver/ patch -Np0 -i ../use_unistd.patch make all WITH_NATIVE=1 NO_PNG=1 } ... md5sums=('cab3b8f636c2fda4a459bbe4bee57fc3' 'f995aeceb710715d6ebd4e1fed6df5db') use_unistd.patch: --- src/hhsearch.C 2012-06-15 16:00:13.000000000 +0100 +++ src/hhsearch.C 2012-12-18 15:49:24.726997376 +0000 @@ -44,6 +44,7 @@ #include <errno.h> // perror() #include <cassert> #include <stdexcept> +#include <unistd.h> // access(), R_OK #ifdef PTHREAD #include <pthread.h> // POSIX pthread functions and data structures

<deleted-account> commented on 2012-02-28 23:54 (UTC)

Initial upload.

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