As of igv 2.17.0, upstream is now compiling with Java 17, so you can uninstall Java 11 now if you have no other use for it, e.g. sudo pacman -Rns jre11-openjdk jre11-openjdk-headless.
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Package Details: igv 2.19.1-1
Package Actions
| Git Clone URL: | https://aur.archlinux.org/igv.git (read-only, click to copy) |
|---|---|
| Package Base: | igv |
| Description: | High-performance visualization tool for interactive exploration of large, integrated genomic datasets. From Broad Institute. |
| Upstream URL: | http://www.broadinstitute.org/software/igv/home |
| Licenses: | MIT |
| Submitter: | decryptedepsilon |
| Maintainer: | balwierz (Rhinoceros) |
| Last Packager: | Rhinoceros |
| Votes: | 14 |
| Popularity: | 0.000000 |
| First Submitted: | 2014-03-23 21:07 (UTC) |
| Last Updated: | 2024-12-10 00:19 (UTC) |
Dependencies (3)
- archlinux-java-runAUR
- jre21-openjdk (jre21-zulu-binAUR, zing-21-binAUR, jdk21-openjdk)
- sh (dashbinshAUR, bash-devel-static-gitAUR, zshbinshAUR, bash-devel-gitAUR, busybox-coreutilsAUR, bash-gitAUR, bash)
Required by (0)
Sources (7)
Rhinoceros commented on 2024-01-08 09:29 (UTC)
Rhinoceros commented on 2023-06-13 12:48 (UTC)
Thanks for the heads-up @ohell. It should work now.
ohell commented on 2023-06-13 12:32 (UTC) (edited on 2023-06-13 12:33 (UTC) by ohell)
Hello, the latest update igv-2.16.1-1 from AUR is not installing:
==> Validating source files with sha512sums...
IGV_Linux_2.16.1_WithJava.zip ... Passed
igv.sh ... Passed
igv_hidpi.sh ... Passed
igv.desktop ... Passed
igv_hidpi.desktop ... Passed
igv-license-2022.txt ... FAILED
IGV_64.png ... Passed
==> ERROR: One or more files did not pass the validity check!
Rhinoceros commented on 2022-10-26 01:06 (UTC)
Thanks @wangzhichao. Yep, they updated it a few hours ago and removed the old version. 🙄
I just updated the package again.
wangzhichao commented on 2022-10-26 00:56 (UTC) (edited on 2022-10-26 00:57 (UTC) by wangzhichao)
The requested URL /igv/projects/downloads/2.15/IGV_Linux_2.15.0_WithJava.zip was not found on this server.
the lastest version is 2.15.1
Rhinoceros commented on 2022-04-23 06:42 (UTC)
@SamLukeYes Thanks for that. Hmm, yes, I don't entirely understand the logic with Java packages. Especially when there are sources available, it seems logical to me to call this package -bin to differentiate, regardless of Java or not.
SamLukeYes commented on 2022-04-23 02:47 (UTC)
@Rhinoceros I see the guidelines here. It says
Packages that use prebuilt deliverables, when the sources are available, must use the -bin suffix.
However, I didn't notice the next sentence, which says
An exception to this is with Java.
Then using the official binary releases would be OK for a Java package without the -bin suffix, perhaps :p
Rhinoceros commented on 2022-04-23 00:32 (UTC)
@SamLukeYes Good point. I did have a vague memory that -bin suffixes are only required if there is an alternative package that builds from source. i.e. if the "from-source" package does not exist yet, then there is no need to name this package igv-bin, and it's fine to call it igv. However, I can't seem to find this now, and perhaps my memory fails me. In fact, I can't find any guidelines in the Arch wiki or anywhere official.
SamLukeYes commented on 2022-04-22 11:37 (UTC)
Upstream source code is available for this package. I suppose this package should have a -bin suffix, or be built from source.
balwierz commented on 2019-04-24 11:18 (UTC)
Thanks for your contribution!
Pinned Comments
Rhinoceros commented on 2024-01-08 09:29 (UTC)
As of igv 2.17.0, upstream is now compiling with Java 17, so you can uninstall Java 11 now if you have no other use for it, e.g.
sudo pacman -Rns jre11-openjdk jre11-openjdk-headless.