Package Details: igv 2.4.11-2

Git Clone URL: https://aur.archlinux.org/igv.git (read-only)
Package Base: igv
Description: High-performance visualization tool for interactive exploration of large, integrated genomic datasets.
Upstream URL: http://www.broadinstitute.org/software/igv/home
Licenses: LGPL
Submitter: decryptedepsilon
Maintainer: balwierz
Last Packager: balwierz
Votes: 10
Popularity: 0.106028
First Submitted: 2014-03-23 21:07
Last Updated: 2018-07-04 12:31

Latest Comments

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Rhinoceros commented on 2018-07-05 01:22

Thanks for the adoption and quick fix, @balwierz.

haawda commented on 2018-07-03 20:19

I am in vacation, orphaning.

balwierz commented on 2018-07-03 16:07

In addition to Rhinoceros' comment, since igv depends on a specific java version (8) it is better to use aur/archlinux-java-run instead of pure java call.

Rhinoceros commented on 2018-07-03 05:44

The PKGBUILD is totally broken after the update to 2.4.11-1

/tmp/igv/PKGBUILD: line 25: cd: IGV_2.4.11: No such file or directory

So I fixed the PKGBUILD to point to the correct directory:

cd igv-${_pkgver}

But still, there is a missing file.

install: cannot stat 'igv.jar': No such file or directory

Rhinoceros commented on 2017-05-19 00:36

Thanks @haawda. The new checksum works fine for me. (I'm not sure why it differs from the one I posted previously, but it's all good now anyway.)

Rhinoceros commented on 2017-05-19 00:13

Maybe @haawda's download was corrupted? Could you please try to redownload and recalculate the checksum? (I tried thrice and consistently got a different checksum to @haawda.)

gokcen commented on 2017-05-18 15:22

Same checksum error here...

Rhinoceros commented on 2017-05-14 08:23

No, it still fails… I'm not sure why I'm getting different checksums than you. The other files are fine. In this case the sha512sum that I get is:

c8def08de0e209e84a39fd07f53345d1a48a1d01974cf9a5bc2c0cc888bd96cc78cc53d6877c50a0aa7090ed2fe5c07164283ae81f4a98c3f15bba75d476e7e9

and the md5sum is

3c62daf14f37834e0624410b7401182b

haawda commented on 2017-05-14 08:10

I switched to sha512 sums, does that work for you?

Rhinoceros commented on 2017-05-14 01:34

I'm getting errors with IGV_2.3.93.zip not passing the checksum test. I tried three times. Is anyone else getting this?