Package Details: jalview

Git Clone URL: (read-only, click to copy)
Package Base: jalview
Description: Bioinformatics Multiple Alignment Editor
Upstream URL:
Licenses: GPL3
Submitter: semi
Maintainer: PumpkinCheshire
Last Packager: PumpkinCheshire
Votes: 12
Popularity: 0.000000
First Submitted: 2011-09-01 15:08 (UTC)
Last Updated: 2022-03-25 07:22 (UTC)

Dependencies (2)

Required by (0)

Sources (3)

Latest Comments

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PumpkinCheshire commented on 2022-03-25 07:25 (UTC)


Sorry, I messed up with the path. Now it's fixed.

darosio commented on 2022-03-25 07:13 (UTC)

Fail to update aur/jalview ->

. . .

==> Starting package()... install: cannot stat '/home/dan/.cache/yay/jalview/src/jalview-*.jar': No such file or directory ==> ERROR: A failure occurred in package(). Aborting... -> error making: jalview

semi commented on 2020-05-13 07:35 (UTC)

Sorry to be slow to respond. I've been hoping to update the package to the new installation method but don't seem to find the time to maintain this anymore.

I'm disowning the package in the hope that someone with more time will pick it up.

Rhinoceros commented on 2020-04-28 00:30 (UTC)

Any chance of an update? This is nine months out of date, and has been flagged for two months now.

iosonofabio commented on 2018-05-31 22:02 (UTC)

outdated sha256sums:

jalview.jar: a7d39e0635db898ab1526e667bf0d0b8f6b90ce6267cfe3c8e4015fdfaed7947

jalview_jnlp_vm.jar: d20da415c23252ce1df138ec1becfd7b4f3b3c8770c1c1040e870867fcd9a4a8

sebstar commented on 2018-05-05 16:35 (UTC) (edited on 2018-05-05 16:36 (UTC) by sebstar)

thanks for the script! I bumped the package to pkgrel 4. Oddly, I had to remove the leading ../ in front of the source files for the install commands.

squirrel42 commented on 2018-01-26 22:09 (UTC)

All of the .jar files currently fail the validity check for me.

semi commented on 2018-01-07 14:53 (UTC) (edited on 2018-01-07 14:54 (UTC) by semi)

Updated to 2.10.3 - Sorry for the long delay.

@sebstar Agreed about your security concerns. There is now a python script included in the repo that will inspect the JNLP file, download the JARs, compute checksums and update the PKGBUILD with the new checksums and URLs. I've also switched to a less bruteforceable SHA256.

Rhinoceros commented on 2018-01-07 11:39 (UTC)

Bump. If there's no response, I'll file an orphan request and fix it myself.

Rhinoceros commented on 2017-10-26 01:15 (UTC)

jalview.jnlp is failing the checksum for me. Is anyone else having this problem? I tried downloading it several times.