Package Details: jalview 2.11.4.0-1

Git Clone URL: https://aur.archlinux.org/jalview.git (read-only, click to copy)
Package Base: jalview
Description: Bioinformatics Multiple Alignment Editor
Upstream URL: https://www.jalview.org/
Licenses: GPL3
Submitter: semi
Maintainer: pika02
Last Packager: pika02
Votes: 11
Popularity: 0.000000
First Submitted: 2011-09-01 15:08 (UTC)
Last Updated: 2024-10-06 01:39 (UTC)

Dependencies (2)

Required by (0)

Sources (3)

Latest Comments

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semi commented on 2014-06-06 09:24 (UTC)

Hmm, it seems to work fine on my system (OpenJDK 1.7.0_55 on AwesomeWM). What window manager are you using? Did this problem occur with the 2.8.0 version? Does the problem also occur when you launch the JalView Desktop from their homepage via Java Web Start (the purple button on http://www.jalview.org/)? The jar files included in the installation are all the ones listed in the JNLP file. I'm not sure if this is the minimal required set but if anyone is willing to try removing some of them and test if Jalview still runs, I'd be happy to remove them from the build :)

Rhinoceros commented on 2014-06-06 03:59 (UTC)

It builds fine, but after launching there are many graphic glitches, making it unusable. (See screenshot https://i.imgur.com/YhN0tsm.png ) I get this for openJDK (1.7.0_55) and Oracle Java (Java version: 1.7.0_60). Also, I'm not sure if it's necessary, but the build installs in a whole lot of files such as /usr/share/java/jalview/JGoogleAnalytics_0.3.jar

semi commented on 2014-06-05 08:26 (UTC)

The download links for both the source package and the installer that I've used so far to build the package are still on 2.8.0. I had to create a new build strategy that will parse the jar filenames from the JNLP file for the Jalview Desktop link. Hopefully this will work for everybody - feedback is appreciated :)

Rhinoceros commented on 2014-06-05 05:11 (UTC)

Newest version is 2.8.1. http://www.jalview.org/development/release-history/281

semi commented on 2011-10-17 16:10 (UTC)

Updated - I just wasn't on e-mail for a few days, I still have time to maintain the package. Thanks for the offer :)

iosonofabio commented on 2011-10-13 17:02 (UTC)

Please update the MD5 hash. If you have no time or interest in the package anymore, please disown it and I'll adopt it. Thanks.

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