Package Details: kallisto 0.51.1-3

Git Clone URL: https://aur.archlinux.org/kallisto.git (read-only, click to copy)
Package Base: kallisto
Description: Quantify abundances of transcripts from RNA-Seq data. doi:10.1038/nbt.3519
Upstream URL: http://pachterlab.github.io/kallisto/
Keywords: bioinformatics
Licenses: BSD-2-Clause
Submitter: flying-sheep
Maintainer: kbipinkumar (BioArchLinuxBot)
Last Packager: BioArchLinuxBot
Votes: 4
Popularity: 0.000000
First Submitted: 2015-08-04 11:14 (UTC)
Last Updated: 2025-11-09 18:07 (UTC)

Latest Comments

flying-sheep commented on 2025-11-09 13:15 (UTC) (edited on 2025-11-09 13:18 (UTC) by flying-sheep)

I think it might be better to use https://bioarchlinux.org/

So I’m disowning this! https://github.com/BioArchLinux/Packages/issues/296

micwoj92 commented on 2025-09-23 00:37 (UTC)

Build fails:

==> Starting build()...
CMake Error at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 has been removed from CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.

  Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway.


-- Configuring incomplete, errors occurred!
==> ERROR: A failure occurred in build().
    Aborting...

flying-sheep commented on 2021-12-19 10:58 (UTC)

I found a way to fix it, and another build error!

ironcyborg commented on 2019-12-09 16:25 (UTC)

The problem is still present in the updated package. Is is solved using the same solution I suggested with the 0.46.0-1 PKGBUILD file, without the new changes you introduced in the latest version.

ironcyborg commented on 2019-12-03 15:43 (UTC)

Build does not work, to solve please add "autoheader" in the build section as follows: ( cd "$srcdir/$pkgname-$pkgver/ext/htslib" autoheader autoreconf )