Package Details: modeller 9.17-1

Git Clone URL: https://aur.archlinux.org/modeller.git (read-only)
Package Base: modeller
Description: 3D Structure Homology Modeller
Upstream URL: http://salilab.org/modeller/
Keywords: modelling science
Licenses: custom
Submitter: None
Maintainer: xduugu
Last Packager: xduugu
Votes: 5
Popularity: 0.006676
First Submitted: 2010-06-01 15:45
Last Updated: 2016-07-06 23:28

Latest Comments

Athemis commented on 2016-02-10 11:53

@xuduugu: Feel free to take over this package

xduugu commented on 2016-02-09 17:23

PKGBUILD for 9.16:
https://gist.github.com/anonymous/39aba0dd67d217a6a354

I've rewritten large parts of the package function, but I hope I didn't break anything.

Also note that config.py is now located at /etc/modeller/config.py

hseara commented on 2016-01-13 12:18

Modeller 9.16 has been released today.
According to the announcement release it has now python 3.5 support,
so there is no longer need to ask for any package previous python 3 version form aur. The default python 3 package should work.

w8jcik commented on 2015-06-18 12:22

There is a typo for x86, "{$CARCH}" at line 32 should be "${CARCH}"

Athemis commented on 2014-09-26 11:06

Version 9.14 supports python3.4.

cyrilccros commented on 2014-04-25 14:44

Thanks for your fix, it works fine. I have been toying around with the python33 configure flags to see if a bug with unicode (ucs2 vs ucs4) explained the error, but it is more complex than that.

Athemis commented on 2014-04-25 14:03

Ok, seems as the current build of modeller is incompatible with python 3.3/3.4.
At least python 3.3 used to work to some point in time, but I haven't figured out yet, what changes in either one of the minor versions of python or the way the package in archlinux is built causes this error.
As a workaround, use python32 from the AUR (there is an updated PKGBUILD in the respective comment section) and reinstall modeller (modeller-9.13-3).

From a terminal run:

export MODINSTALL9v13=/usr/lib/modeller
python3.2

and 'import modeller' should work.

cyrilccros commented on 2014-04-25 13:06

Using modeller 9.13 and python3.3 (from AUR) on x86_64, I get this when trying import modeller in a script:
ImportError: /usr/lib/python3.3/site-packages/_modeller.so: undefined symbol: PyUnicodeUCS4_Concat
Any idea why? What is your set-up?
Thanks a lot

Runiq commented on 2014-02-17 12:46

This is a *very* late heads-up to your previous comment: Simply using "import modeller" works. I've used that version throughout the entire last year, so I'm pretty sure of it. :)

Athemis commented on 2012-09-25 15:35

Both should work now. In theory at least, I just tested if importing the modeller package into python scripts works without errors. I did no further testing though.

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