Package Details: modeller 9.21-1

Git Clone URL: https://aur.archlinux.org/modeller.git (read-only)
Package Base: modeller
Description: 3D Structure Homology Modeller
Upstream URL: http://salilab.org/modeller/
Keywords: modelling science
Licenses: custom
Submitter: None
Maintainer: Athemis
Last Packager: Athemis
Votes: 5
Popularity: 0.000001
First Submitted: 2010-06-01 15:45
Last Updated: 2019-01-21 11:25

Pinned Comments

Athemis commented on 2018-08-10 11:13

@M4G0: That's caused by archlinux rolling out python 3.7. I'll try to just move the python 3.6 files of modeller into the appropriate folders for python 3.7, but I can't promise anything since only python 3.6 is officially supported by upstream. Since modeller is distributed as binary-only we might have to wait for upstream to release a version compatible with python 3.7

UPDATE: Files are in place now using the latest release of this package. However it may not function as intended with python 3.7!

Latest Comments

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inter1965 commented on 2019-02-17 10:28

actually you use the binary from anaconda, .e.g https://anaconda.org/salilab/modeller/9.21/download/linux-64/modeller-9.21-py37_1.tar.bz2 https://anaconda.org/salilab/modeller/9.21/download/linux-64/modeller-9.21-py27_1.tar.bz2

Athemis commented on 2018-08-10 11:13

@M4G0: That's caused by archlinux rolling out python 3.7. I'll try to just move the python 3.6 files of modeller into the appropriate folders for python 3.7, but I can't promise anything since only python 3.6 is officially supported by upstream. Since modeller is distributed as binary-only we might have to wait for upstream to release a version compatible with python 3.7

UPDATE: Files are in place now using the latest release of this package. However it may not function as intended with python 3.7!

M4G0 commented on 2018-08-09 23:31

The update to 9.20 broke something. It won't recognize if I try to import it as a python module ('no module named modeller') and if I run $mod9.20 script.py it breaks in the first line ('no module named os'). I'm using python 3.7, and I exported the path correctly (export MODINSTALL9v20=/usr/lib/modeller). 9.19 ran fine, but the update with yay broke something. I'll keep trying and report if I have any success.

UPDATE: After @Athemis updated, all seems to work fine. Thanks!

Athemis commented on 2016-02-10 11:53

@xuduugu: Feel free to take over this package

xduugu commented on 2016-02-09 17:23

PKGBUILD for 9.16:
https://gist.github.com/anonymous/39aba0dd67d217a6a354

I've rewritten large parts of the package function, but I hope I didn't break anything.

Also note that config.py is now located at /etc/modeller/config.py

hseara commented on 2016-01-13 12:18

Modeller 9.16 has been released today.
According to the announcement release it has now python 3.5 support,
so there is no longer need to ask for any package previous python 3 version form aur. The default python 3 package should work.

w8jcik commented on 2015-06-18 12:22

There is a typo for x86, "{$CARCH}" at line 32 should be "${CARCH}"

Athemis commented on 2014-09-26 11:06

Version 9.14 supports python3.4.

cyrilccros commented on 2014-04-25 14:44

Thanks for your fix, it works fine. I have been toying around with the python33 configure flags to see if a bug with unicode (ucs2 vs ucs4) explained the error, but it is more complex than that.

Athemis commented on 2014-04-25 14:03

Ok, seems as the current build of modeller is incompatible with python 3.3/3.4.
At least python 3.3 used to work to some point in time, but I haven't figured out yet, what changes in either one of the minor versions of python or the way the package in archlinux is built causes this error.
As a workaround, use python32 from the AUR (there is an updated PKGBUILD in the respective comment section) and reinstall modeller (modeller-9.13-3).

From a terminal run:

export MODINSTALL9v13=/usr/lib/modeller
python3.2

and 'import modeller' should work.