Package Details: mosdepth 0.3.4-1

Git Clone URL: (read-only, click to copy)
Package Base: mosdepth
Description: Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Upstream URL:
Licenses: MIT
Submitter: clintval
Maintainer: meanjollies
Last Packager: meanjollies
Votes: 1
Popularity: 0.000000
First Submitted: 2017-11-01 20:34 (UTC)
Last Updated: 2023-06-26 02:57 (UTC)

Dependencies (4)

Required by (0)

Sources (1)

Latest Comments

meanjollies commented on 2023-10-09 20:43 (UTC)

I acknowledge this package is out of date. It will be updated once upstream issue 209 is resolved.

meanjollies commented on 2023-09-16 18:58 (UTC) (edited on 2023-09-20 00:42 (UTC) by meanjollies)

Thanks for the report (sorry for the delay). I filed a bug with the nim package, which has since been fixed. However, a new build failure occurs, due to a change introduced in nim 2.0.0 where shallow() is no longer supported:

mosdepth-0.3.5/mosdepth.nim(504, 3) Error: undeclared identifier: 'shallow'

I've opened an issue upstream.

buggs commented on 2023-09-15 22:53 (UTC) (edited on 2023-09-15 22:56 (UTC) by buggs)

==> Starting build()...
       Tip: 1 messages have been suppressed, use --verbose to show them.
packageparser.nim(395)   readPackageInfo

    Error:  Could not read package info file in /home/andy/.cache/paru/clone/mosdepth/src/mosdepth-0.3.4/mosdepth.nimble;
        ...   Reading as ini file failed with:
        ...     Invalid section: .
        ...   Evaluating as NimScript file failed with:
        ...     Error: cannot open '/usr/lib/nim/lib/system.nim'
        ... printPkgInfo() failed.
==> ERROR: A failure occurred in build().
error: failed to build 'mosdepth-0.3.4-1':
error: packages failed to build: mosdepth-0.3.4-1

malacology commented on 2022-08-28 14:45 (UTC)

git should be added as makedepends