Package Details: openms 2.7.0-1

Git Clone URL: (read-only, click to copy)
Package Base: openms
Description: C++ library and tools for LC/MS data management and analyses
Upstream URL:
Licenses: BSD
Submitter: saxonbeta
Maintainer: lukaszimmermann
Last Packager: lukaszimmermann
Votes: 6
Popularity: 0.000019
First Submitted: 2014-04-24 21:42 (UTC)
Last Updated: 2021-10-06 12:07 (UTC)

Latest Comments

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a.kudelin commented on 2021-07-14 13:22 (UTC)

Please apply this MR as a patch:

lukaszimmermann commented on 2020-10-12 07:09 (UTC)

Should work now

lukaszimmermann commented on 2020-10-08 19:14 (UTC)

Yes, I think we have to wait for the fix in Eigen.

levitsky commented on 2020-10-08 13:50 (UTC) (edited on 2020-10-08 13:50 (UTC) by levitsky)

Build of 2.6.0 fails for me. The following eigen bug seems related:

[ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o In file included from /usr/include/eigen3/Eigen/Core:88, from /usr/include/eigen3/unsupported/Eigen/NonLinearOptimization:15, from /home/lev/.cache/yay/openms/src/OpenMS-2.6.0/src/openms/source/MATH/STATISTICS/GammaDistributionFitter.cpp:42: /usr/include/eigen3/Eigen/src/Core/products/Parallelizer.h: In function ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool)’: /usr/include/eigen3/Eigen/src/Core/products/Parallelizer.h:162:19: error: ‘eigen_assert_exception’ is not a member of ‘Eigen’ 162 | if (errorCount) EIGEN_THROW_X(Eigen::eigen_assert_exception()); | ^~~~~~~~~~~~~ make[3]: *** [src/openms/CMakeFiles/OpenMS.dir/build.make:528: src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o] Error 1 make[2]: *** [CMakeFiles/Makefile2:3060: src/openms/CMakeFiles/OpenMS.dir/all] Error 2 make[1]: *** [CMakeFiles/Makefile2:3067: src/openms/CMakeFiles/OpenMS.dir/rule] Error 2 make: *** [Makefile:584: OpenMS] Error 2 ==> ERROR: A failure occurred in build(). Aborting...

Luxii commented on 2020-03-23 17:04 (UTC) (edited on 2020-03-30 08:14 (UTC) by Luxii)

OpenMS Version 2.5.0 is working. No errors.

xonq commented on 2020-01-29 15:05 (UTC)

Build is failing on mine as well. CMake Errors.

lukaszimmermann commented on 2019-12-05 08:59 (UTC)

Thanks for reporting. I will try to patch soon.

FoPref commented on 2019-12-03 12:15 (UTC) (edited on 2019-12-03 14:15 (UTC) by FoPref)

Does not build on my recently updated Arch installation. I get CMake errors.

See my bug report to upstream:

lukaszimmermann commented on 2019-01-31 13:07 (UTC)

I currently split this packages into several subpackages to support different installation flavors. That's why there has not been an update, yet.