Search Criteria
Package Details: openms 2.7.0-1
Package Actions
| Git Clone URL: | https://aur.archlinux.org/openms.git (read-only, click to copy) |
|---|---|
| Package Base: | openms |
| Description: | C++ library and tools for LC/MS data management and analyses |
| Upstream URL: | http://www.openms.de |
| Licenses: | BSD |
| Submitter: | saxonbeta |
| Maintainer: | lukaszimmermann |
| Last Packager: | lukaszimmermann |
| Votes: | 6 |
| Popularity: | 0.000019 |
| First Submitted: | 2014-04-24 21:42 (UTC) |
| Last Updated: | 2021-10-06 12:07 (UTC) |
Dependencies (16)
- boost (boost-git, boost174)
- coin-or-mp
- eigen (eigen-git)
- glpk (glpk-git)
- hdf5 (hdf5-git, hdf5-openmpi)
- qt5-base (qt5-base-git, qt5-base-headless)
- qt5-svg (qt5-svg-git)
- sqlite (sqlite-minimal-git, sqlite-fts3-parenthesis, sqlite-fossil)
- xerces-c
- autoconf (autoconf-git) (make)
- automake (automake-1.7, automake-git, automake-1.11, automake-1.15, automake-1.14) (make)
- cmake (cmake-git) (make)
- fakeroot (fakeroot-git, fakeroot-tcp) (make)
- gcc (gccrs-git, gcc-git) (make)
- make (make-git) (make)
- patch (patch-git) (make)
Latest Comments
1 2 3 Next › Last »
a.kudelin commented on 2021-07-14 13:22 (UTC)
Please apply this MR as a patch: https://github.com/OpenMS/OpenMS/pull/5127
lukaszimmermann commented on 2020-10-12 07:09 (UTC)
Should work now
lukaszimmermann commented on 2020-10-08 19:14 (UTC)
Yes, I think we have to wait for the fix in Eigen.
levitsky commented on 2020-10-08 13:50 (UTC) (edited on 2020-10-08 13:50 (UTC) by levitsky)
Build of 2.6.0 fails for me. The following eigen bug seems related: https://bugs.archlinux.org/task/68118
[ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o In file included from /usr/include/eigen3/Eigen/Core:88, from /usr/include/eigen3/unsupported/Eigen/NonLinearOptimization:15, from /home/lev/.cache/yay/openms/src/OpenMS-2.6.0/src/openms/source/MATH/STATISTICS/GammaDistributionFitter.cpp:42: /usr/include/eigen3/Eigen/src/Core/products/Parallelizer.h: In function ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool)’: /usr/include/eigen3/Eigen/src/Core/products/Parallelizer.h:162:19: error: ‘eigen_assert_exception’ is not a member of ‘Eigen’ 162 | if (errorCount) EIGEN_THROW_X(Eigen::eigen_assert_exception()); | ^~~~~~~~~~~~~ make[3]: *** [src/openms/CMakeFiles/OpenMS.dir/build.make:528: src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o] Error 1 make[2]: *** [CMakeFiles/Makefile2:3060: src/openms/CMakeFiles/OpenMS.dir/all] Error 2 make[1]: *** [CMakeFiles/Makefile2:3067: src/openms/CMakeFiles/OpenMS.dir/rule] Error 2 make: *** [Makefile:584: OpenMS] Error 2 ==> ERROR: A failure occurred in build(). Aborting...Luxii commented on 2020-03-23 17:04 (UTC) (edited on 2020-03-30 08:14 (UTC) by Luxii)
OpenMS Version 2.5.0 is working. No errors.
xonq commented on 2020-01-29 15:05 (UTC)
Build is failing on mine as well. CMake Errors.
lukaszimmermann commented on 2019-12-05 08:59 (UTC)
Thanks for reporting. I will try to patch soon.
FoPref commented on 2019-12-03 12:15 (UTC) (edited on 2019-12-03 14:15 (UTC) by FoPref)
Does not build on my recently updated Arch installation. I get CMake errors.
See my bug report to upstream: https://github.com/OpenMS/OpenMS/issues/4393
lukaszimmermann commented on 2019-01-31 13:07 (UTC)
I currently split this packages into several subpackages to support different installation flavors. That's why there has not been an update, yet.
1 2 3 Next › Last »