Thanks for reporting. I will try to patch soon.
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Package Details: openms 2.7.0-1
| Git Clone URL: | https://aur.archlinux.org/openms.git (read-only, click to copy) |
|---|---|
| Package Base: | openms |
| Description: | C++ library and tools for LC/MS data management and analyses |
| Upstream URL: | http://www.openms.de |
| Licenses: | BSD |
| Submitter: | saxonbeta |
| Maintainer: | lukaszimmermann |
| Last Packager: | lukaszimmermann |
| Votes: | 6 |
| Popularity: | 0.000000 |
| First Submitted: | 2014-04-24 21:42 (UTC) |
| Last Updated: | 2021-10-06 12:07 (UTC) |
Dependencies (16)
- boost (boost-gitAUR)
- coin-or-mp
- eigen (eigen-gitAUR)
- glpk (glpk-gitAUR, glpk-cut-logAUR)
- hdf5 (hdf5-gitAUR, hdf5-openmpi)
- qt5-base (qt5-base-gitAUR, qt5-base-headlessAUR)
- qt5-svg (qt5-svg-gitAUR)
- sqlite (sqlite-fossilAUR)
- xerces-c
- autoconf (autoconf-gitAUR) (make)
- automake (automake-gitAUR) (make)
- cmake (cmake-gitAUR) (make)
- fakeroot (fakeroot-gitAUR, fakeroot-tcpAUR) (make)
- gcc (gccrs-gitAUR, gcc11AUR, gcc-gitAUR, gcc-snapshotAUR) (make)
- make (make-gitAUR) (make)
- patch (patch-gitAUR) (make)
Required by (0)
Sources (5)
lukaszimmermann commented on 2019-12-05 08:59 (UTC)
FoPref commented on 2019-12-03 12:15 (UTC) (edited on 2019-12-03 14:15 (UTC) by FoPref)
Does not build on my recently updated Arch installation. I get CMake errors.
See my bug report to upstream: https://github.com/OpenMS/OpenMS/issues/4393
lukaszimmermann commented on 2019-01-31 13:07 (UTC)
I currently split this packages into several subpackages to support different installation flavors. That's why there has not been an update, yet.
lukaszimmermann commented on 2018-03-11 14:42 (UTC)
Sorry for the delay. I added an environment file to /etc/profile.d
levitsky commented on 2018-02-12 10:11 (UTC)
The package builds fine now, but I get this error when running the installed executables:
OpenMS FATAL ERROR! Cannot find shared data! OpenMS cannot function without it! To resolve this, set the environment variable 'OPENMS_DATA_PATH' to the OpenMS share directory (e.g., '/usr/share/OpenMS'). Exiting now.
Setting the variable to the suggested path indeed helps, but maybe this could be done at the package side? Adding a simple profile.d file with export command or whatever the best practice is.
Thanks!
lukaszimmermann commented on 2018-01-24 13:33 (UTC)
Thanks for the bug report. Should be resolved.
levitsky commented on 2018-01-19 14:25 (UTC)
Hi, I'm getting a validation error after the update:
==> Validating source files with sha256sums... OpenMS-2.3.0-src.tar.gz ... Passed OpenMS-TOPPView.desktop ... FAILED OpenMS-TOPPAS.desktop ... FAILED ==> ERROR: One or more files did not pass the validity check!
saxonbeta commented on 2017-08-10 23:28 (UTC)
@lukaszimmermann I have added you as comaintainer
Pinned Comments
levitsky commented on 2023-08-31 23:24 (UTC)
Since this package is outdated and I wanted a way to install openms, I made openms-bin that uses the deb package from the Github release. I put the maintainers and contributors of this package as contributors over there because I borrowed some stuff from here. I'm not really an AUR guru so please feel free to comment. Thank you guys for this package.