AUR (en) - ovito

Git Clone URL:	https://aur.archlinux.org/ovito.git (read-only, click to copy)
Package Base:	ovito
Description:	Open Visualization Tool
Upstream URL:	https://www.ovito.org
Keywords:	chemistry scientific simulation visualization
Licenses:	GPL-3.0-or-later
Conflicts:	ovito-git
Submitter:	janoliver
Maintainer:	carlosal1015
Last Packager:	carlosal1015
Votes:	12
Popularity:	0.41
First Submitted:	2013-01-10 12:33 (UTC)
Last Updated:	2024-11-12 05:00 (UTC)

Latest Comments

physkets commented on 2024-11-15 06:56 (UTC)

I'm seeing this error with version 3.11.1-1

CMake Error at src/ovito/core/CMakeLists.txt:195 (TARGET_SOURCES):
  Cannot find source file:

    /home/physkets/.config/trizen/sources/ovito/src/ovito-v3.11.1/src/3rdparty/zstd/zlibWrapper/zstd_zlibwrapper.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm
  .ccm .cxxm .c++m .h .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90
  .f95 .f03 .hip .ispc


CMake Error at src/ovito/core/CMakeLists.txt:191 (TARGET_LINK_LIBRARIES):
  Target "Core" links to:

    zstd::libzstd_static

  but the target was not found.  Possible reasons include:

    * There is a typo in the target name.
    * A find_package call is missing for an IMPORTED target.
    * An ALIAS target is missing.

nimble2005 commented on 2024-08-15 01:37 (UTC) (edited on 2024-08-15 01:40 (UTC) by nimble2005)

[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/ClusterGraphObject.cpp.o
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationNetworkObject.cpp.o
[ 84%] Building CXX object src/ovito/netcdf/CMakeFiles/NetCDFPlugin.dir/AMBERNetCDFExporter.cpp.o
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationVis.cpp.o
[ 84%] Linking CXX shared library ../../../lib/ovito/plugins/NetCDFPlugin.so
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/RenderableDislocationLines.cpp.o
/usr/bin/ld: /usr/lib/libmpi.so.40: undefined reference to `fi_freeinfo@FABRIC_1.7'
/usr/bin/ld: /usr/lib/libmpi.so.40: undefined reference to `fi_dupinfo@FABRIC_1.7'
/usr/bin/ld: /usr/lib/libmpi.so.40: undefined reference to `fi_getinfo@FABRIC_1.7'
collect2: error: ld returned 1 exit status
make[2]: *** [src/ovito/netcdf/CMakeFiles/NetCDFPlugin.dir/build.make:187: lib/ovito/plugins/NetCDFPlugin.so] Error 1
make[1]: *** [CMakeFiles/Makefile2:2963: src/ovito/netcdf/CMakeFiles/NetCDFPlugin.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/MicrostructurePhase.cpp.o
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/data/ClusterGraph.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/data/DislocationNetwork.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/DislocationAnalysisModifier.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/DislocationAnalysisEngine.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/StructureAnalysis.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/CrystalPathFinder.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/ElasticMapping.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/InterfaceMesh.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/DislocationTracer.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/elasticstrain/ElasticStrainModifier.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/elasticstrain/ElasticStrainEngine.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/grains/GrainSegmentationModifier.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/grains/GrainSegmentationEngine.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/grains/NodePairSampling.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationSliceModifierDelegate.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationReplicateModifierDelegate.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationAffineTransformationModifierDelegate.cpp.o
[ 86%] Linking CXX shared library ../../../lib/ovito/plugins/CrystalAnalysis.so
[ 86%] Built target CrystalAnalysis
make: *** [Makefile:146: all] Error 2
==> ERROR: A failure occurred in build().
    Aborting...
 -> error making: ovito-exit status 4
 -> Failed to install the following packages. Manual intervention is required:
ovito - exit status 4

Hi, i am getting an error as shown above. Does anyone know how to solve this problem?

physkets commented on 2024-06-24 06:49 (UTC)

@carlosal1015 Ya, so it requires a re-build which can be done by increasing the pkgrel, I think.

carlosal1015 commented on 2024-06-24 01:57 (UTC)

Hi @physkets, looks like related with https://bbs.archlinux.org/viewtopic.php?pid=2179661#p2179661

physkets commented on 2024-06-24 01:48 (UTC)

Attempting to open Ovito results in this error:

ovito: error while loading shared libraries: libavformat.so.60: cannot open shared object file: No such file or directory

I think the pkgrel needs to be incremented to 2 in order to force a re-compile with the updated library.

physkets commented on 2024-03-18 07:32 (UTC)

I don't think an openssh dependency is necessary, because ovito includes a libssh implementation and uses that. AFAIK, it is able to use the system openssh in the Pro version. So maybe it is okay to have that dependency in case any one upgrades to Pro. Up to you as to what you want to do.

physkets commented on 2024-03-04 04:41 (UTC)

Could you add a -D OVITO_BUILD_SSH_CLIENT=ON to the build options?

It has been set to OFF by default: https://gitlab.com/stuko/ovito/-/commit/2d2f956479a27cca9979ce3cdaa3f3628dd34155

physkets commented on 2024-02-07 23:06 (UTC)

Yes, I have the same problem.

hmcezar commented on 2024-02-06 08:37 (UTC) (edited on 2024-02-07 08:10 (UTC) by hmcezar)

I'm getting an error building the manual:

[  4%] Generating user manual
Running Sphinx v7.2.6
loading intersphinx inventory from https://ovito.org/docs/current/python/objects.inv...
loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv...
building [mo]: all of 0 po files
writing output... 
building [html]: all source files
updating environment: [new config] 186 added, 0 changed, 0 removed
reading sources... [100%] usage/viewports
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... copying static files... done
copying extra files... done
done
writing output... [100%] usage/viewports

Warning, treated as error:
/home/hmcezar/Software/ovito/src/ovito-v3.10.1/doc/manual/new_features.rst:98:py:meth reference target not found: ovito.data.DislocationSegment.point_along_line
make[2]: *** [doc/manual/CMakeFiles/documentation.dir/build.make:72: doc/manual/CMakeFiles/documentation] Error 2
make[1]: *** [CMakeFiles/Makefile2:3847: doc/manual/CMakeFiles/documentation.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[  4%] Linking CXX shared library ../../../lib/ovito/libovito_geogram.so
[  4%] Built target geogram
make: *** [Makefile:146: all] Error 2
==> ERROR: A failure occurred in build().
    Aborting...

Is anyone else having a similar problem?

carlosal1015 commented on 2024-02-02 12:50 (UTC)

Hi folks, let's try with vulkan feature disabled https://gitlab.com/stuko/ovito/-/issues/228#note_1752872064

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