Arch Linux User Repository

Thank you @carlosal1015 for the fix and @edeustua for digging into it.

Just tried pkgrel 4 and it compiled in my system.

Same problem here with zstd_zlibwrapper.h.

The zstd package from archlinux core does not include the wrapper. It has to be compiled or installed some other way. The commented lines in src/ovito/core/CMakeLists.txt:194-200 build the wrapper correctly, but the zstd library has to be downloaded first into src/3rdparty/zstd. I'd think the solution could be one of the following (let me know what you think):

1. Get the source from zstd into src/3rdparty/zstd and patch the cmake file to uncomment corresponding lines in PKGBUILD.
2. Create a new AUR package that provides https://github.com/facebook/zstd/tree/dev/zlibWrapper and use it as a dependency for ovito.

Let me know if I can help.

I see the same error as @hmcezar. Looks like we need the zstd submodule, but we don't do a git build. So I don't know how. Are the zstd sources included in the tarball? If not, they should include it.

In my case compiles fine, let's investigate the new issue.

Dear carlosal1015 thank you for trying to fix this! Now I get past the ./configure, but the build is failing:

[ 10%] Building CXX object src/ovito/core/CMakeFiles/Core.dir/Core_autogen/mocs_compilation.cpp.o
In file included from /var/tmp/pamac-build-hmcezar/ovito/src/build/src/ovito/core/Core_autogen/HM7M6C4NFO/moc_GzipIODevice.cpp:9,
                 from /var/tmp/pamac-build-hmcezar/ovito/src/build/src/ovito/core/Core_autogen/mocs_compilation.cpp:22:
/var/tmp/pamac-build-hmcezar/ovito/src/build/src/ovito/core/Core_autogen/HM7M6C4NFO/../../../../../../ovito-v3.11.2/src/ovito/core/utilities/io/gzdevice/GzipIODevice.h:31:14: fatal error: zstd_zlibwrapper.h: No such file or directory
   31 |     #include <zstd_zlibwrapper.h>
      |              ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [src/ovito/core/CMakeFiles/Core.dir/build.make:110: src/ovito/core/CMakeFiles/Core.dir/Core_autogen/mocs_compilation.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1662: src/ovito/core/CMakeFiles/Core.dir/all] Error 2

Hey folks, I asked upstream about avoid using static zstd. Let's see https://gitlab.com/stuko/ovito/-/issues/232

I'm having the same problem physkets is having:

-- Configuring done (4.1s)
CMake Error at src/ovito/core/CMakeLists.txt:195 (TARGET_SOURCES):
  Cannot find source file:

    /var/tmp/pamac-build-hmcezar/ovito/src/ovito-v3.11.2/src/3rdparty/zstd/zlibWrapper/zstd_zlibwrapper.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm
  .ccm .cxxm .c++m .h .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90
  .f95 .f03 .hip .ispc


CMake Error at src/ovito/core/CMakeLists.txt:191 (TARGET_LINK_LIBRARIES):
  Target "Core" links to:

    zstd::libzstd_static

  but the target was not found.  Possible reasons include:

    * There is a typo in the target name.
    * A find_package call is missing for an IMPORTED target.
    * An ALIAS target is missing.

Any tips?

I'm seeing this error with version 3.11.1-1

CMake Error at src/ovito/core/CMakeLists.txt:195 (TARGET_SOURCES):
  Cannot find source file:

    /home/physkets/.config/trizen/sources/ovito/src/ovito-v3.11.1/src/3rdparty/zstd/zlibWrapper/zstd_zlibwrapper.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .mpp .m .M .mm .ixx .cppm
  .ccm .cxxm .c++m .h .hh .h++ .hm .hpp .hxx .in .txx .f .F .for .f77 .f90
  .f95 .f03 .hip .ispc


CMake Error at src/ovito/core/CMakeLists.txt:191 (TARGET_LINK_LIBRARIES):
  Target "Core" links to:

    zstd::libzstd_static

  but the target was not found.  Possible reasons include:

    * There is a typo in the target name.
    * A find_package call is missing for an IMPORTED target.
    * An ALIAS target is missing.

[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/ClusterGraphObject.cpp.o
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationNetworkObject.cpp.o
[ 84%] Building CXX object src/ovito/netcdf/CMakeFiles/NetCDFPlugin.dir/AMBERNetCDFExporter.cpp.o
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationVis.cpp.o
[ 84%] Linking CXX shared library ../../../lib/ovito/plugins/NetCDFPlugin.so
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/RenderableDislocationLines.cpp.o
/usr/bin/ld: /usr/lib/libmpi.so.40: undefined reference to `fi_freeinfo@FABRIC_1.7'
/usr/bin/ld: /usr/lib/libmpi.so.40: undefined reference to `fi_dupinfo@FABRIC_1.7'
/usr/bin/ld: /usr/lib/libmpi.so.40: undefined reference to `fi_getinfo@FABRIC_1.7'
collect2: error: ld returned 1 exit status
make[2]: *** [src/ovito/netcdf/CMakeFiles/NetCDFPlugin.dir/build.make:187: lib/ovito/plugins/NetCDFPlugin.so] Error 1
make[1]: *** [CMakeFiles/Makefile2:2963: src/ovito/netcdf/CMakeFiles/NetCDFPlugin.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/MicrostructurePhase.cpp.o
[ 84%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/data/ClusterGraph.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/data/DislocationNetwork.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/DislocationAnalysisModifier.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/DislocationAnalysisEngine.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/StructureAnalysis.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/CrystalPathFinder.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/ElasticMapping.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/InterfaceMesh.cpp.o
[ 85%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/dxa/DislocationTracer.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/elasticstrain/ElasticStrainModifier.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/elasticstrain/ElasticStrainEngine.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/grains/GrainSegmentationModifier.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/grains/GrainSegmentationEngine.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/modifier/grains/NodePairSampling.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationSliceModifierDelegate.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationReplicateModifierDelegate.cpp.o
[ 86%] Building CXX object src/ovito/crystalanalysis/CMakeFiles/CrystalAnalysis.dir/objects/DislocationAffineTransformationModifierDelegate.cpp.o
[ 86%] Linking CXX shared library ../../../lib/ovito/plugins/CrystalAnalysis.so
[ 86%] Built target CrystalAnalysis
make: *** [Makefile:146: all] Error 2
==> ERROR: A failure occurred in build().
    Aborting...
 -> error making: ovito-exit status 4
 -> Failed to install the following packages. Manual intervention is required:
ovito - exit status 4

Hi, i am getting an error as shown above. Does anyone know how to solve this problem?

@carlosal1015 Ya, so it requires a re-build which can be done by increasing the pkgrel, I think.