Package Details: picard-tools 3.3.0-1

Git Clone URL: https://aur.archlinux.org/picard-tools.git (read-only, click to copy)
Package Base: picard-tools
Description: set of tools for working with next generation sequencing data in the BAM format
Upstream URL: https://github.com/broadinstitute/picard
Licenses: MIT
Submitter: mschu
Maintainer: malacology (BioArchLinuxBot)
Last Packager: BioArchLinuxBot
Votes: 8
Popularity: 0.000000
First Submitted: 2013-11-25 11:23 (UTC)
Last Updated: 2024-10-10 00:02 (UTC)

Dependencies (4)

Required by (0)

Sources (1)

Latest Comments

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MikeDacre commented on 2014-11-19 18:32 (UTC)

Thanks for the PKGBUILD wookietreiber, applied. Apologies for the delay, I was away.

alexpe87 commented on 2014-11-19 11:09 (UTC)

MikeDacre doesn't seem to be happy to update this to something more current...though the PKGBUILD from wookietreiber works perfectly fine.

wookietreiber commented on 2014-11-13 12:49 (UTC)

Update: I just renamed the bin file to just picard: $ picard -h $ picard SortSam -h

wookietreiber commented on 2014-11-13 12:18 (UTC)

Upstream devs changed the way separate tools are deployed: now there is only a single jar which contains all the command line tools, see release notes [1]. See [2] for an updated PKGBUILD. This provides a single 'picard-tools' in /usr/bin. With this you can access all the tools: $ picard-tools -h $ picard-tools SortSam -h [1]: https://github.com/broadinstitute/picard/releases/download/1.124/README.txt [2]: https://github.com/wookietreiber/PKGBUILDs/tree/master/picard-tools

alexpe87 commented on 2014-09-06 12:00 (UTC)

There seems to be a bug inside this package: AddOrReplaceReadGroups calls CreateSequenceDictionary unfortunately....so the links seem to be wrong...

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