Package Details: plink 1.07-3

Git Clone URL: https://aur.archlinux.org/plink.git (read-only, click to copy)
Package Base: plink
Description: Whole genome association analysis toolset
Upstream URL: http://zzz.bwh.harvard.edu/plink/download.shtml
Licenses: GPL-2.0-or-later
Submitter: Stunts
Maintainer: Stunts
Last Packager: Stunts
Votes: 0
Popularity: 0.000000
First Submitted: 2016-04-13 11:17 (UTC)
Last Updated: 2025-08-26 18:13 (UTC)

Latest Comments

Stunts commented on 2025-08-26 18:14 (UTC)

Thank you @a821! I have credited you in the PKGBUILD. =-)

a821 commented on 2025-08-25 08:42 (UTC)

I managed to make it compile with a patch. I also made cosmetic changes to the PKGBUILD. I made the changes available here: https://codeberg.org/a821/plink

a821 commented on 2025-08-22 11:04 (UTC)

Fails to build in a clean chroot. I tried using clang++ as the comment below to no avail (see error excerpt below). I could provide a full log, but I think the error should be reproducible.

error: no matching function for call to object of type 'const std::less<Locus *>'
       if (!_M_impl._M_key_compare(_S_key(__x), __k))

adityaruplaha commented on 2025-03-05 18:58 (UTC) (edited on 2025-03-05 18:58 (UTC) by adityaruplaha)

Updated versions of PLINK (both 1.9 and 2.0) can be installed from:

https://aur.archlinux.org/packages/plink1.9-git

https://aur.archlinux.org/packages/plink2-mkl-git

rmagno commented on 2025-02-17 16:24 (UTC)

PLINK 2.0 exists now: https://www.cog-genomics.org/plink/2.0/.

fujoyaki commented on 2021-12-28 21:29 (UTC)

Compilation didn't work as is (an unfulfilled assertion, when using g++), but it did work using clang. Works using the following diff:

diff --git a/PKGBUILD b/PKGBUILD
index 0bb8ebd..7803a5a 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -22,7 +22,7 @@ prepare() {

 build() {
   cd ${srcdir}/${pkgname}-${pkgver}-src
-  make
+  make CXX_UNIX='clang++'
 }

 package() {

Stunts commented on 2021-10-17 12:22 (UTC) (edited on 2021-10-17 12:22 (UTC) by Stunts)

If you are looking for plink 2.0, look at https://aur.archlinux.org/packages/plink1.9-git/ instead.

This is mainly for 2 reasons:

a) plink-2.0 is not yet released (only a beta is available)

b) plink-2.0 is not 100% retro-compatible with plink-1.x

Stunts commented on 2018-01-29 13:01 (UTC)

Updated the URLs. Thank you @clintval !

clintval commented on 2018-01-27 22:58 (UTC)

Upstream no longer exists. Now at:

http://zzz.bwh.harvard.edu/plink/download.shtml#download