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Package Details: python-biopython 1.87-1

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Git Clone URL:	https://aur.archlinux.org/python-biopython.git (read-only, click to copy)
Package Base:	python-biopython
Description:	Freely available Python tools for computational molecular biology
Upstream URL:	http://www.biopython.org
Licenses:	LicenseRef-Biopython License
Submitter:	jelly
Maintainer:	kbipinkumar (BioArchLinuxBot)
Last Packager:	BioArchLinuxBot
Votes:	1
Popularity:	0.002567
First Submitted:	2024-10-06 11:39 (UTC)
Last Updated:	2026-04-05 18:06 (UTC)

Dependencies (22)

glibc (glibc-git^AUR, glibc-eac^AUR, glibc-git-native-pgo^AUR)
python
python-numpy (python-numpy-git^AUR, python-numpy-mkl-bin^AUR, python-numpy1^AUR, python-numpy-mkl-tbb^AUR, python-numpy-mkl^AUR)
python-pillow (python-pillow-simd-git^AUR, hosaka-studio^AUR)
python-scipy (python-scipy-git^AUR, python-scipy-mkl-bin^AUR, python-scipy-mkl-tbb^AUR, python-scipy-mkl^AUR)
python-build (make)
python-installer (make)
python-setuptools (make)
python-wheel (make)
python-coverage (check)
python-igraph (check)
python-matplotlib (python-matplotlib-git^AUR) (check)
python-mmtf^AUR (check)
python-networkx (python-networkx-git^AUR) (check)
python-rdflib (check)
python-reportlab (check)
python-scipy (python-scipy-git^AUR, python-scipy-mkl-bin^AUR, python-scipy-mkl-tbb^AUR, python-scipy-mkl^AUR) (check)
python-matplotlib (python-matplotlib-git^AUR) (optional) – to plot phylogenetic trees.
python-mysql-connector (optional) – for BioSQL module
python-networkx (python-networkx-git^AUR) (optional) – for certain niche functions in Bio.Phylo module
Show 2 more dependencies...

Required by (19)

Sources (1)

http://www.biopython.org/DIST/biopython-1.87.tar.gz

Latest Comments

vedranmiletic commented on 2026-04-06 07:59 (UTC)

When installing, I get:

====================================================================== FAIL: test_writing (test_Align_bigbed.TestAlign_extended_bed.test_writing) Test writing bigbed_extended.bb.

Traceback (most recent call last): File "/home/vedm/.cache/paru/clone/python-biopython/src/biopython-1.87/Tests/test_Align_bigbed.py", line 6920, in test_writing self.assertEqual(correct, data) ^^^^^^^^^^^^^^^ AssertionError: b'\xe[88 chars]00\xbd\x05\x00\x00\x00\x00\x00\x00\x0b\x00\t\x[153227 chars]\x87' != b'\xe[88 chars]00\xbe\x05\x00\x00\x00\x00\x00\x00\x0b\x00\t\x[153314 chars]\x87'

micwoj92 commented on 2024-12-16 23:03 (UTC)

Please add optdeps on python-scipy, python-pillow, python-networkx, python-reportlab, python-msgpack, python-igraph, python-rdflib, python-mmtf, python-matplotlib.