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Package Details: python2-pybedtools-git 0.7.10.r25.g9ab3ff6-2
| Git Clone URL: | https://aur.archlinux.org/python-pybedtools-git.git (read-only, click to copy) |
|---|---|
| Package Base: | python-pybedtools-git |
| Description: | Python wrapper for the bioinformatics genomic arithmetic tool bedtools |
| Upstream URL: | https://pypi.python.org/pypi/pybedtools |
| Licenses: | |
| Conflicts: | |
| Provides: | |
| Submitter: | clintval |
| Maintainer: | mrwillbarnz |
| Last Packager: | clintval |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2017-12-19 17:40 |
| Last Updated: | 2018-01-22 02:27 |
Dependencies (15)
- bedtools (bedtools-git)
- python2
- python2-numpy
- python2-pandas (python2-pandas-git)
- python2-pysam
- python2-six
- cython (cython-kivy, cython-git) (make)
- cython2 (cython2-kivy) (make)
- python (python-dbg) (make)
- python-setuptools (make)
- python2 (make)
- python2-setuptools (make)
- htslib (htslib-git) (optional) – for working with SAM/BAM/CRAM files
- python2-matplotlib (optional) – for plotting genomic intervals
- ucsc-kent-genome-tools (optional) – for bedgraph to bigwig conversions
Required by (1)
- python2-varcode (requires python2-pyvcf)